| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,902,728 – 10,902,841 |
| Length | 113 |
| Max. P | 0.523642 |
| Location | 10,902,728 – 10,902,841 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.07 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -21.71 |
| Energy contribution | -22.07 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10902728 113 - 22407834 CUUGCUCAUUACCUUGAACCAGCUACA------AUGUUUUCCACUUGUGGCAUUAAUUUCUGCUGUGUAAGCAGAUAAAUUGCAA-AAUGUCAAAAGUUGUUGACAGUCAUUGGCAUCAA ..((((.((.((.(((.....((((((------(.((.....))))))))).......((((((.....)))))).......)))-..((((((......)))))))).)).)))).... ( -26.30) >DroSec_CAF1 44396 112 - 1 C-UGCUCAUUACCUUGAACCAGCUACA------AUGUUUUCCACUUGUGGCAUUAAUUUCUGCUGUGUAAGCAGAUAAAUUGCAA-AAUGUCGAAAGUUGUUGACAGUCAUUGGCAUCAA .-((((.((.((.(((.....((((((------(.((.....))))))))).......((((((.....)))))).......)))-..((((((......)))))))).)).)))).... ( -25.90) >DroEre_CAF1 42572 112 - 1 C-UGAUCAUUACCUUGAACCAGCUACA------AUGUUUUCCACUUGUGGCAUUAAUUUCUGCUGUGUAAGCAGAUAAAUUGCAA-AAUGUCAAAAGUUGUUGACAGUCAUUGGCAUCAA .-((((((......)))....((((..------.((((..(.((((.(((((((((((((((((.....))))))..)))))...-.)))))).)))).)..)))).....)))).))). ( -26.70) >DroWil_CAF1 59878 103 - 1 -----------------GCAUGCUUCCAUAUUCUUGUUCUCCACUUGUGGCAUUAAUUUCUGCUGUGUAAGCAGAUAAAUUGCAAAAAUGUCAAAAGAUGUUGACAGUCAUUGGCAUUAA -----------------..(((((.........................(((......((((((.....)))))).....))).....((((((......))))))......)))))... ( -21.00) >DroYak_CAF1 43478 112 - 1 C-UGCUCAUUACCUUGAACCAGCUACA------AUGUUUUCCACUUGUGGCAUUAAUUUCUGCUGUGUAAGCAGAUAAAUUGCAA-AAUGUCAAAAGUUGUUGACAGUCAUUGGCAUCAA .-((((.((.((.(((.....((((((------(.((.....))))))))).......((((((.....)))))).......)))-..((((((......)))))))).)).)))).... ( -26.20) >DroAna_CAF1 47347 112 - 1 C-AGCUCAUUACCUUGAGCCCGCUUCA------AUGUUUUCCACUUGUGGCAUUAAUUUCUGCUGUGUAAGCAGAUAAAUUGCAA-AAUGUCAAAAGUUGUUGACAGUCAUUGGCAUCAA .-.(((((......)))))..(((...------.((((..(.((((.(((((((((((((((((.....))))))..)))))...-.)))))).)))).)..))))......)))..... ( -31.50) >consensus C_UGCUCAUUACCUUGAACCAGCUACA______AUGUUUUCCACUUGUGGCAUUAAUUUCUGCUGUGUAAGCAGAUAAAUUGCAA_AAUGUCAAAAGUUGUUGACAGUCAUUGGCAUCAA .....................((((.........((((..(.((((.(((((((((((((((((.....))))))..))))).....)))))).)))).)..)))).....))))..... (-21.71 = -22.07 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:13 2006