| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,899,442 – 10,899,543 |
| Length | 101 |
| Max. P | 0.822066 |
| Location | 10,899,442 – 10,899,543 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 62.54 |
| Mean single sequence MFE | -22.25 |
| Consensus MFE | -11.08 |
| Energy contribution | -12.65 |
| Covariance contribution | 1.57 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.822066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10899442 101 + 22407834 ACACACAGGACAGUGCUCACUUUGGGCCAACACACACA---------CA-----CACAUUCACAUACAGGUGAGCCUUUAGUGACGCUGUUUUAAUUAAACCAGCUUCAGUAUUU ......(((((((((.(((((..((((...........---------..-----.....((((......))))))))..))))))))))))))...................... ( -24.76) >DroSec_CAF1 39058 108 + 1 ACUCACAGGACAGUGCUCACUUUGGGCCAACACA--CACACCACACUCA-----CACGUACACAUACACGUGAGCCUUUAGUGGCGCUGUUUUAAUUAAACCAGAUUCUGUAUUC ....((((((((((((.((((..((((.......--.............-----(((((........))))).))))..))))))))))))..((((......)))))))).... ( -27.80) >DroAna_CAF1 42695 104 + 1 -CUCACGUCGCAGUGUUCACUUUAC--UAA-ACUC---UACUUUAGUCGCAUGCCACACGGAUACAC----CUGCAUUUUGUUGCACCGUUUUAAUUAAAGAAGUUCUGUUAUUU -.....((.((((((........((--(((-(...---...))))))))).))).))(((((.((..----.((((......))))...((((......)))))))))))..... ( -14.20) >consensus ACUCACAGGACAGUGCUCACUUUGGGCCAACACAC_CA_AC___A_UCA_____CACAUACACAUACA_GUGAGCCUUUAGUGGCGCUGUUUUAAUUAAACCAGAUUCAGUAUUU ......(((((((((.(((((..((((..............................................))))..))))))))))))))...................... (-11.08 = -12.65 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:11 2006