| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,166,831 – 1,166,937 |
| Length | 106 |
| Max. P | 0.515956 |
| Location | 1,166,831 – 1,166,937 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.81 |
| Mean single sequence MFE | -28.75 |
| Consensus MFE | -19.57 |
| Energy contribution | -18.77 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.515956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1166831 106 - 22407834 AUCGGAAUG-------UCUUACCUGUUCCGUUCGAGUUUUGUCAAGAUCCAUUUGGAGUUCCCUGGGUCUUGGUUCACUCCAGACUUGUCUCUCGAUUUCCACGUCAGCGGGC ..((((((.-------........)))))).(((((....(((((((((((...((....)).))))))))((......)).)))......)))))...((.((....)))). ( -28.80) >DroGri_CAF1 15119 109 - 1 UU--UAUUCA-UUUU-ACUCACCUGCUCGGUGCGCAUUUUGUCCAGUUCCAUUUGGAGCUCCUGCGGUCGCGGCUCGUUCCACACUUGACGCUCGAUUUCCGCAUCGGCACUC ..--......-....-.......(((.(((((((......(((.(((..((..((((((..((((....))))...))))))....))..))).)))...))))))))))... ( -30.20) >DroSim_CAF1 270 106 - 1 AUUGGAAUA-------UCUUACCUGUUCCGUUCGUGUUUUAUCCAGAUCCAUUUGGAGUUCCCUGGGUCUCGGCUCACUCCAGACUUGUCUCUCGAUUUCAACGUCAGCGGGC ...((((((-------.......))))))(((((((((..(((.(((..((((((((((.....((((....))))))))))))..))..))).)))...)))....)))))) ( -27.10) >DroEre_CAF1 328 110 - 1 AUAGGAAUGUGCG---UCUUACCUGUUCUGUUCGUGCUUUAUCAAGAUCCAUUUGGAGUUCCCUGGGUCUUGGCUCACUCCAGACUUGUCUUUCGAUUUCCACGUCAGCGGGC .(((((.......---)))))((((..(((..((((....((((((((...((((((((.....((((....))))))))))))...)))))..)))...)))).))))))). ( -28.30) >DroYak_CAF1 273 110 - 1 UUAGGAAUGCUGG---UCUUACCUGUUCUGUUCGCGUUUUAUCAAGAUCCAUCUGGAGUUCCCUUGGUCUUGGCUCACUCCAGACUUGUCUCUCGAUCUCCACGUCAGCGGGC ........((.((---.....)).))((((((.((((...(((.(((..((((((((((..((........))...))))))))..))..))).)))....)))).)))))). ( -29.00) >DroMoj_CAF1 11208 109 - 1 UU--CAAUGC-CAUCCA-UUACCUGCUCUGUGCGUGCUUUGUCUAGCUCCAUUUGCAGCUCCUGCGGCCGUGGCUCGUUCCAGACUUGCCGCUCGAUUUCUGCAUCGGCACUU ..--...(((-(.....-....((((...(((.(.(((......))).))))..))))....(((((..(((((..(((...)))..))))).......)))))..))))... ( -29.10) >consensus AU_GGAAUG_______UCUUACCUGUUCUGUUCGUGUUUUAUCAAGAUCCAUUUGGAGUUCCCUGGGUCUUGGCUCACUCCAGACUUGUCUCUCGAUUUCCACGUCAGCGGGC .....................((((((.....((((....(((.(((..((((((((((..((........))...))))))))..))..))).)))...))))..)))))). (-19.57 = -18.77 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:15 2006