Locus 3738

Sequence ID 2L_DroMel_CAF1
Location 10,885,471 – 10,885,565
Length 94
Max. P 0.713390
window5887

overview

Window 7

Location 10,885,471 – 10,885,565
Length 94
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 68.29
Mean single sequence MFE -24.42
Consensus MFE -6.68
Energy contribution -7.52
Covariance contribution 0.84
Combinations/Pair 1.22
Mean z-score -1.95
Structure conservation index 0.27
SVM decision value 0.38
SVM RNA-class probability 0.713390
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10885471 94 - 22407834
CAAAUUGUCUCCAAAGGACAAUUAAUAGCAGACCCCUAUUCACUUUCAAACUUCAUU--------------------------GAAACCAUCUUUGGUUGCCGGUGGAAAGGCAAUUUGU
..((((((((.....))))))))....(((((..(((.((((((.((((......))--------------------------))(((((....)))))...)))))).)))...))))) ( -23.60)
>DroSec_CAF1 25229 93 - 1
CAAAUUGUCUCCAAA-AACAAUUAAUAGCAGACCCCUAUUCACUUUCGACCUUCAUU--------------------------GAAACCAUCUUUGGUUGCCGGUUGAAGAGCAAUUUGU
(((((((.(((....-.......(((((.......)))))....(((((((......--------------------------..(((((....)))))...))))))))))))))))). ( -20.40)
>DroSim_CAF1 25588 94 - 1
CAAAUGGUAUCCAAAGAACAAUUAAUAGCAGACCCCUAUUCACUUUCGACCUUCAUU--------------------------GAAACCAUCUUUGGUUGCCGGUUGAAGAGCAAUUUGU
(((.(((((.(((((((......(((((.......)))))...((((((......))--------------------------))))...))))))).))))).)))............. ( -19.00)
>DroEre_CAF1 25583 82 - 1
CAAAUUGUCUCUACAGGACAUUCAAUUGACAGCCCCUGGAAAAU-------------------------------------CUC-GGCCACGUUUGGUGGCCGAGUGAACAGCAAUUUGU
((((((((.....((((....((....)).....))))......-------------------------------------(((-((((((.....)))))))))......)))))))). ( -28.60)
>DroYak_CAF1 26027 120 - 1
CGAAUUGUCCCUAAAGCACAAUUAAUAGCAGACCCCUAUUCGAUUACGACCUUCAUUUGUGGCCUCCGGGCCAUGGAAAAUCUCAGGCCACGUUUGGGUGCCGGGUGAAAACCAAUUUGU
((((((((((((...(((((((((((((.......))))).)))).......(((..(((((((((((.....))))........)))))))..))))))).))).))....))))))). ( -30.50)
>consensus
CAAAUUGUCUCCAAAGAACAAUUAAUAGCAGACCCCUAUUCACUUUCGACCUUCAUU__________________________GAAACCAUCUUUGGUUGCCGGUUGAAAAGCAAUUUGU
((((((((...............(((((.......))))).............................................(((((....)))))............)))))))). ( -6.68 =  -7.52 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:49 2006