Locus 3735

Sequence ID 2L_DroMel_CAF1
Location 10,874,952 – 10,875,046
Length 94
Max. P 0.842793
window5883

overview

Window 3

Location 10,874,952 – 10,875,046
Length 94
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 75.14
Mean single sequence MFE -18.44
Consensus MFE -12.85
Energy contribution -13.60
Covariance contribution 0.75
Combinations/Pair 1.16
Mean z-score -1.28
Structure conservation index 0.70
SVM decision value 0.76
SVM RNA-class probability 0.842793
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10874952 94 - 22407834
CUGGCAUACA--AAAA----AAGGCAAUCAGUUUGAUUGUAUUUGAUGGCUCCACAGCUCCCAAGUAGUUGGUCAUACCCCCCCCC-CAACCGCCUAUC---CC
..(((.....--....----...((((((.....))))))(((((..((((....))))..))))).(((((.............)-)))).)))....---.. ( -20.42)
>DroSec_CAF1 21661 98 - 1
CUGGCAUACA--AAAA----AAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCCACAGCUCCCAAGUAGUUGGUCAUACCCCCUCCCCCCUCCCUUCACUCAGCC
..(((...((--((..----...((((((.....)))))).))))((((((..((.(((....))).)).)))))).........................))) ( -16.90)
>DroSim_CAF1 22081 95 - 1
CUGGCAUACA--AAAA----AAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCCACAGCUCCCAAGUAGUUGGUCAUACCCCCGACCCCCUCCGCUCAUC---CC
..(((.....--....----...((((((.....))))))(((((..((((....))))..))))).(((((........))))).......)))....---.. ( -18.70)
>DroEre_CAF1 22082 81 - 1
CUGGCAUACA--AAA-----AAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCCACAGCUCCCAAGUAGUUGGCCAUUCCCCCCUCC----------------CC
.((((..((.--...-----...((((((.....))))))(((((..((((....))))..))))).))..))))...........----------------.. ( -18.30)
>DroYak_CAF1 22408 82 - 1
CUGGCAUACA--CAAAAAAUAAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCCACAGCCCCCAAGUAGUUGGCCAUUCCCCCCU--------------------
.((((..((.--...........((((((.....))))))(((((..((((....))))..))))).))..)))).........-------------------- ( -19.90)
>DroAna_CAF1 22989 80 - 1
C----CUACGGUAAGA----AAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCUACAGCGCCAGUGUACAGAGGCAGAAGUCCCUCC----------------CC
.----.....(((..(----((.((((((.....)))))).)))..((((.(....).))))...))).((((........)))).----------------.. ( -16.40)
>consensus
CUGGCAUACA__AAAA____AAGGCAAUCAAUUUGAUUGUAUUUGAUGGCUCCACAGCUCCCAAGUAGUUGGUCAUACCCCCCUCC________________CC
.((((..................((((((.....))))))(((((..((((....))))..))))).....))))............................. (-12.85 = -13.60 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:45 2006