Locus 3734

Sequence ID 2L_DroMel_CAF1
Location 10,873,880 – 10,873,985
Length 105
Max. P 0.884229
window5882

overview

Window 2

Location 10,873,880 – 10,873,985
Length 105
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 79.50
Mean single sequence MFE -21.75
Consensus MFE -16.25
Energy contribution -16.42
Covariance contribution 0.17
Combinations/Pair 1.25
Mean z-score -1.74
Structure conservation index 0.75
SVM decision value 0.93
SVM RNA-class probability 0.884229
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10873880 105 + 22407834
UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCACAUAAUGAGCGCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUCCAACUCACAC--ACACACACUCG
((((((.........(((((((...........)))))))...(((((((..((....)).)))))))....))))))................--........... ( -24.30)
>DroPse_CAF1 22712 83 + 1
-------------AUUUGGUACAA--ACAUUAUUUGUCACAUAAUGAUCCCUCCCGAUGGCCGGCUAUAAGUGAUAAGAG-------CCCAAAC--ACACUCACGGG
-------------...........--.((((((.......))))))......((((((((....)))).........(((-------.......--...))).)))) ( -11.00)
>DroSec_CAF1 20621 105 + 1
UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCACAUAAUGAGCGCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUCCAACUCACAC--ACACACACACG
((((((.........(((((((...........)))))))...(((((((..((....)).)))))))....))))))................--........... ( -24.30)
>DroSim_CAF1 21056 103 + 1
UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCACAUAAUGAGCGCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUCCAACUCACAC--AC--ACACACG
((((((.........(((((((...........)))))))...(((((((..((....)).)))))))....))))))................--..--....... ( -24.30)
>DroEre_CAF1 21057 107 + 1
UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCACAUAAUGAGCGCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUCCGCCACACAGACACACACACUGG
((((((.........(((((((...........)))))))...(((((((..((....)).)))))))....))))))((.....))....(((.........))). ( -25.30)
>DroYak_CAF1 21303 101 + 1
UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCAUAUAAUGAGCCCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUUCGACAC------ACACACACUCG
((((....))))((((((((((...........))))).....((((((...((....))..))))))......................------......))))) ( -21.30)
>consensus
UUUGUAUACAAACGAGUGGCACUUACUUAUUUUGUGCCACAUAAUGAGCGCUCCUGAUGGUCGCUUAUAAAUUAUAAAGCAUUCCAACUCACAC__ACACACACUCG
...............(((((((...........)))))))...(((((((..((....)).)))))))....................................... (-16.25 = -16.42 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:44 2006