Locus 3730

Sequence ID 2L_DroMel_CAF1
Location 10,864,902 – 10,864,998
Length 96
Max. P 0.697832
window5877

overview

Window 7

Location 10,864,902 – 10,864,998
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 82.53
Mean single sequence MFE -29.83
Consensus MFE -20.14
Energy contribution -21.17
Covariance contribution 1.03
Combinations/Pair 1.21
Mean z-score -2.06
Structure conservation index 0.67
SVM decision value 0.34
SVM RNA-class probability 0.697832
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10864902 96 - 22407834
AAGAGCUGCAAAAAAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCAGGCCAGGAAGCCAGCAAUGGAAGAUUCGUGGCCGUGGUCCAAC
.(((((.(((.(((.(.....).))).))).)))))...((((((........(((((.(((.(((....)))....))).))))))))))).... ( -32.50)
>DroPse_CAF1 12558 87 - 1
AAAAAAUGAG-AAAAGAGAAUCAUUUAUGCCGCUUUAAAACCCGCAAACGACA-GUCGGAAAGCCAG---GGCCGGCUUUCUGGCCU--GUCCA--
...((((((.-.........)))))).....((..........))....((((-(((((((((((..---....)))))))))).))--)))..-- ( -25.50)
>DroSec_CAF1 11751 96 - 1
AAGAGCUGCAAAAAAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCAGGCCAGGAAGCCAGCAGUGGAGGAUUCGUGGCCGUGGUCCAUC
.(((((.(((.(((.(.....).))).))).)))))...((((((........(((((.(((.(((....)))....))).))))))))))).... ( -30.10)
>DroSim_CAF1 11948 96 - 1
AAGAGCUGCAAAAAAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCAGGCCAGGAAGCCAACAGUGGAGGAUUCGUGGCCGUGGUCCAUC
.(((((.(((.(((.(.....).))).))).)))))...((((((........(((((.(((.(((....)))....))).))))))))))).... ( -30.20)
>DroEre_CAF1 11895 87 - 1
AAGAGCUGCAAA-AAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCUGGCCAGGAAGCCA--------GGAUUCGUGGCCGUGGUCCGUG
.(((((.(((.(-((........))).))).)))))...(((((((((((..((((......))))--------))))).)))))).......... ( -31.90)
>DroYak_CAF1 12106 87 - 1
AAGAGCUGCAAA-AAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCAGGCCAGGAAGCCG--------GGAUUCGUGGUCGUGGUCCAUG
.(((((.(((.(-((........))).))).)))))...(((((((((((...(((......))).--------))))).)))))).......... ( -28.80)
>consensus
AAGAGCUGCAAAAAAGGGAAUCAUUUAUGCCGCUUUAAAGGCCACAAUCCGCAGGCCAGGAAGCCAG___UGGAGGAUUCGUGGCCGUGGUCCAUC
.(((((.(((.(((.(.....).))).))).)))))...((((((........(((((.(((.((.........)).))).))))))))))).... (-20.14 = -21.17 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:39 2006