Locus 373

Sequence ID 2L_DroMel_CAF1
Location 1,163,551 – 1,163,653
Length 102
Max. P 0.564259
window586

overview

Window 6

Location 1,163,551 – 1,163,653
Length 102
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 77.52
Mean single sequence MFE -22.94
Consensus MFE -15.82
Energy contribution -16.30
Covariance contribution 0.48
Combinations/Pair 1.31
Mean z-score -1.41
Structure conservation index 0.69
SVM decision value 0.06
SVM RNA-class probability 0.564259
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1163551 102 - 22407834
CGCGAAUAUGUCCAACCUACAGC--AGAAAUCUCCGGGGAAAUUGCGAUGGCA----------ACUGGUCUUAUUGUAAUUUCGAUUCGCCCUCGCGAAUUUCACUCGCUU-AUU
.((((..........(((..((.--(....)))..)))((((((((((((((.----------....)))..)))))))))))(((((((....)))))))....))))..-... ( -26.10)
>DroSec_CAF1 57114 102 - 1
CGCGAAUAUGUUUAACGUACAGC-----AAUCUCCGGGGAAAUUGCGAUGGCUACU-------ACUGGUCUUAUUGUAAUUUCGAUUCGCCCUCGCGAAUUUCACUCGCUC-AUU
.((...((((.....))))..))-----......((((((((((((((((((((..-------..)))))..)))))))))))(((((((....)))))))...))))...-... ( -28.10)
>DroSim_CAF1 52202 101 - 1
CGCGAAUAUGUUCAACCUACAGC-----AAUCUCCGGGGAAAUUGCGAUGGCUACU-------ACUGGUCUUAUUGUAAUUUCGAUUCGCCCUCGCGAAUUUCACUCGCUC-AU-
.((((..........(((..((.-----...))..)))((((((((((((((((..-------..)))))..)))))))))))(((((((....)))))))....))))..-..- ( -26.80)
>DroEre_CAF1 50988 112 - 1
CGCGAACAUAUUCAACCUACAACCUAUUAAUCUCGAGGGAAAUUGCAAUUCCUACCCAUUCACGGUGGUCUUAUUGUUAUUUUAAUUCGC-CUCGUAAA-UUCACUCGCUU-AUA
.((((.............................(((((((((.(((((..(((((.......)))))....))))).)))))......)-)))((...-...))))))..-... ( -18.70)
>DroYak_CAF1 52446 113 - 1
CGCGAAUAUAUUCAACCUACAACCCAGUAAUCUCCAGGAAAAUUCCAACUUCUGCUCAUUCACGUUGGCCUAAUUGUAAUUUUAAUUCGC-CUCGUAAA-UUCACUCGCUUUUUU
.((((...............................(((....)))...............(((..(((..(((((......))))).))-).)))...-.....))))...... ( -15.00)
>consensus
CGCGAAUAUGUUCAACCUACAGC__A__AAUCUCCGGGGAAAUUGCGAUGGCUACU_______ACUGGUCUUAUUGUAAUUUCGAUUCGCCCUCGCGAAUUUCACUCGCUU_AUU
.((((.................................((((((((((((...(((..........)))..))))))))))))(((((((....)))))))....))))...... (-15.82 = -16.30 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:12 2006