| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,856,907 – 10,857,021 |
| Length | 114 |
| Max. P | 0.769826 |
| Location | 10,856,907 – 10,857,021 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 82.19 |
| Mean single sequence MFE | -42.28 |
| Consensus MFE | -29.40 |
| Energy contribution | -31.32 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.769826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10856907 114 - 22407834 CAUCUUUGCAGCUGCUUCGCAAGGAAAGCAAGGGCCGCAUCACCUUGGUGGAUGUGAUGACCCAUUAUUGGGUGAAGGCGGGAAUGGCCGAAAGGGAGCUGCAGCUGCAGAAAC ....((((((((((((((....))).(((.....((((.((((((((((((..........))))))..))))))..))))......((....))..))))))))))))))... ( -49.90) >DroPse_CAF1 5190 111 - 1 U---CUUGUAGCUACUACGAAAGCAGAGUAAUGGCCGGAUCUCUUUGGUGGAUGUGAUGACCCAUCCUUGGGUUAAGGAGGGCAUGGCCGAGAGGGAAGCACAACUGCGGCUGA .---......(((.((.(....).)))))...((((...(((((((.(.....((.(((.(((.((((((...)))))))))))).))).))))))).(((....))))))).. ( -34.60) >DroSec_CAF1 5381 114 - 1 UAUCUUUGCAGCUGCUUCGCAAGGAAAGCAAGGGCCGCAUCACCUUGGUGGAUGUGAUGACCCACUAUUGGGUCAAGGCGGGAAUGGCCGAAAGGGAGCUGCAGCUGCAGAAAC ....((((((((((((((....))).(((....((((((((((....)).)))))..(((((((....))))))).)))........((....))..))))))))))))))... ( -52.80) >DroEre_CAF1 5528 114 - 1 UACCUUUGUAGCUGCUCCGCAAGGAUAGCAAGGGCCGAAUCACCUUGGUGGACGUGAUGACGCACUAUUGGGUGAAGGCGGGAAUGGCCGAAAGGGAACUGCAGCUCCAGAAAC ....((((.(((((((((....)))......(((((...(((((((((((..(((....))))))))..)))))).)))........((....))...)))))))).))))... ( -41.40) >DroYak_CAF1 5595 114 - 1 UACCUUUGUAGCUGCUUCGCAAGGAGAGCAAGGGCCGGAUCACCUUGGUGGAGGUGAUGACGCACUAUUGGGUCAAGGCGGGAAUGGCCGAAAGGGAACUGCAGCUCCAGAAAC ....((((.((((.((((....)))).(((...(((..((((((((....))))))))(((.((....)).)))..)))........((....))....))))))).))))... ( -40.40) >DroPer_CAF1 5288 111 - 1 U---CUUGUAGCUACUACGAAAGCAGAGUAAUGGCCGGAUCUCUUUGGUGGAUGUGAUGACCCAUCCUUGGGUUAAGGAGGGCAUGGCCGAGAGGGAAGCACAACUGCGGCUGA .---......(((.((.(....).)))))...((((...(((((((.(.....((.(((.(((.((((((...)))))))))))).))).))))))).(((....))))))).. ( -34.60) >consensus UA_CUUUGUAGCUGCUUCGCAAGGAGAGCAAGGGCCGGAUCACCUUGGUGGAUGUGAUGACCCACUAUUGGGUCAAGGCGGGAAUGGCCGAAAGGGAACUGCAGCUGCAGAAAC ....((((((((((((((....))).......(((((..((.((((............((((((....)))))))))).))...)))))...........)))))))))))... (-29.40 = -31.32 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:34 2006