Locus 3726

Sequence ID 2L_DroMel_CAF1
Location 10,849,729 – 10,849,825
Length 96
Max. P 0.664003
window5870

overview

Window 0

Location 10,849,729 – 10,849,825
Length 96
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 78.26
Mean single sequence MFE -13.10
Consensus MFE -7.96
Energy contribution -7.30
Covariance contribution -0.66
Combinations/Pair 1.14
Mean z-score -1.83
Structure conservation index 0.61
SVM decision value 0.28
SVM RNA-class probability 0.664003
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10849729 96 - 22407834
UUUCCCCCCACCAAUCCCCCCG---------AACACAACAUGAAAUAUUUAUAUUGUUAUAUCUAUAUAAUAAUUUCAAUUAGAUGUUUUGGGUUAUUUUUGUUU------
........((..(((..(((.(---------((((.....((((((..((((((.(......).))))))..))))))......))))).)))..)))..))...------ ( -14.80)
>DroSec_CAF1 83163 99 - 1
UUUUCC-CCACCACCACACCCU-----------CACAGCAUGAGAAAUUUAUAUUGCUAUAUCUAUAUAAUAAAUUCAAUUAGAUAUGUUGGCUUAUUUUUGUUCGAUGUU
......-...............-----------...(((((..(((.........((((((((((...............)))))))...))).........))).))))) ( -10.53)
>DroSim_CAF1 90251 109 - 1
UUUUCC-CCACCACAACACCCUUCCUCAGUCUACACAGCAUGAAAUAUUUAUAUUGCUAUAUCUAUACAAUAAAUUCAAUUAGAUAUUUUGGCUUAUUUUUGUUC-AUGUU
......-.............................((((((((......(((..((((((((((...............)))))))...))).))).....)))-))))) ( -13.96)
>consensus
UUUUCC_CCACCACAACACCCU__________ACACAGCAUGAAAUAUUUAUAUUGCUAUAUCUAUAUAAUAAAUUCAAUUAGAUAUUUUGGCUUAUUUUUGUUC_AUGUU
..........(((.......................((((..............))))(((((((...............)))))))..)))................... ( -7.96 =  -7.30 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:33 2006