Locus 3725

Sequence ID 2L_DroMel_CAF1
Location 10,848,787 – 10,848,902
Length 115
Max. P 0.537121
window5869

overview

Window 9

Location 10,848,787 – 10,848,902
Length 115
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 76.27
Mean single sequence MFE -22.82
Consensus MFE -19.96
Energy contribution -19.77
Covariance contribution -0.19
Combinations/Pair 1.11
Mean z-score -0.61
Structure conservation index 0.87
SVM decision value 0.01
SVM RNA-class probability 0.537121
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10848787 115 - 22407834
AAGGUGCGAUUUAAUGCA----UUCCAUUUCAAUCCAUUCCAGAUGGCUCCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGCCUGU
....(((((((.((((..----...))))..))))....((((((.(((............))).))))))))).((((((....((.....))..(((((.......))))))))))) ( -26.80)
>DroVir_CAF1 114437 109 - 1
---------UUUUAUUUAUUAAUGUUAUUUA-ACCAUUAACAGAUGGCACCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGCCUGU
---------............(((((.....-..........(((((.....))))).....((((((((......)))).))))))))).........((((((......)))))).. ( -23.30)
>DroPse_CAF1 83228 100 - 1
GAG-------------------UUCUCUUUGAAACAACUUCAGAUGGCUCCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGUCUGU
..(-------------------(..((((((...........(((((.....))))).....((((((((......)))).))))...........))))))..))............. ( -20.30)
>DroWil_CAF1 130531 99 - 1
-AC-------------------UUUUCUAUAAUUUGUUUACAGAUGGCUCCUCCAUCAUAUAGCGAUUUGGGCAAACAAGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGUCUAU
-..-------------------...........(((((....(((((.....))))).....((((((((......)))).)))).........)))))((((((......)))))).. ( -20.40)
>DroMoj_CAF1 117650 109 - 1
---------UUGUAUUUACUAAUAUUAUUUC-ACACUCAAUAGAUGGCUCCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGCCUGU
---------((((..................-..........(((((.....))))).....((((((((......)))).))))..........))))((((((......)))))).. ( -22.50)
>DroAna_CAF1 93570 98 - 1
GC---UCGAUUCUAUUCA----U--------------UUUCAGAUGGCUCCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUCGGCCUGU
((---(.((......((.----.--------------.....(((((.....))))).....((((((((......)))).)))))).....)))))..(((((........))))).. ( -23.60)
>consensus
_A_______UU_UAUU_A____UUUUAUUUA_ACCAUUUACAGAUGGCUCCUCCAUCAUACAGCGAUUUGGGCAAACAGGCUCGCGACAUCUUCAGCAAAGGCUACAACUUUGGCCUGU
..........................................(((((.....))))).....((((((((......)))).))))..............((((((......)))))).. (-19.96 = -19.77 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:32 2006