Locus 3722

Sequence ID	2L_DroMel_CAF1
Location	10,846,819 – 10,846,918
Length	99
Max. P	0.812788

overview

Window 0

Location	10,846,819 – 10,846,918
Length	99
Sequences	6
Columns	99
Reading direction	forward
Mean pairwise identity	83.77
Mean single sequence MFE	-38.41
Consensus MFE	-35.80
Energy contribution	-35.42
Covariance contribution	-0.38
Combinations/Pair	1.24
Mean z-score	-1.56
Structure conservation index	0.93
SVM decision value	0.65
SVM RNA-class probability	0.812788
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10846819 99 + 22407834
UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGAUCUGGGUAUGUCGGUGUUUUGGCGGCCAUUACGGGCUGUAUGAAUAGGU
.(((((((((((.((((((.((.....)).)))..(((.((.((((((....)))))).)).))).....))).)))))).)))))............. ( -42.00)
>DroSec_CAF1 80237 99 + 1
UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGAUCCGGGUAUGUCGGCGUUUUGGCGGCCAUUGCAGGCGGUAUGAAUAGGU
.(((.(((((((.((((((.((.....)).)))..(((.((.(((((......))))).)).))).....))).)))))).).)))............. ( -36.80)
>DroSim_CAF1 87354 99 + 1
UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGAUCCGGGUAUGUCGGCGUUUUGGCGGCCAUUGCGGGCGGUAUGAAUAGGU
.(((((((((((.((((((.((.....)).)))..(((.((.(((((......))))).)).))).....))).)))))).)))))............. ( -42.90)
>DroEre_CAF1 81215 99 + 1
UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGGUCAGGGUAUGUCGGCGUGGUGGUGGCCAUUAUGGGCGGAAUGAAUAGGU
.(((((((((((.(((((....((.....)).((.(((.((.(((((......))))).)).))).))))))).)))))).)))))............. ( -41.10)
>DroYak_CAF1 83093 99 + 1
UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGGUCGGGGUAUGUAGGCGUGGUUUUGGCCAUUAUGGGCGGUAUGAAGAGGU
.((((((((((((((((((((((....((((..((((......)))).))))........)))))))))))...)))))).)))))............. ( -42.60)
>DroMoj_CAF1 115867 93 + 1
GGCCAGGAUGAUAACCACGCUUGAACAAAUCGCGGGCCAGUUUGCCCAAAUCAGCAUAAACAGGCGGC------GCCAUUUUUGGCCAAAUAAAUAAUU
((((((((.........((((((..(.....).((((......)))).............))))))..------.....))))))))............ ( -25.09)
>consensus
UGCCCGGAUGGUAGCCGCGCUUGAAGAGAUCGCGGGCCAGCUUGCCCAGAUCAGGGUAUGUCGGCGUUUUGGCGGCCAUUACGGGCGGUAUGAAUAGGU
((((((((((((..(((((.((.....)).)))))(((.((.(((((......))))).)).))).........)))))).))))))............ (-35.80 = -35.42 +  -0.38)

alignment

secondary structure

dotplot

Window 1

Location	10,846,819 – 10,846,918
Length	99
Sequences	6
Columns	99
Reading direction	reverse
Mean pairwise identity	83.77
Mean single sequence MFE	-30.88
Consensus MFE	-23.95
Energy contribution	-23.32
Covariance contribution	-0.64
Combinations/Pair	1.26
Mean z-score	-1.89
Structure conservation index	0.78
SVM decision value	0.31
SVM RNA-class probability	0.681010
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10846819 99 - 22407834
ACCUAUUCAUACAGCCCGUAAUGGCCGCCAAAACACCGACAUACCCAGAUCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA
.............(((((...((((((((........(.......)((((((((((......))))).)))))......).))))))).....))))). ( -33.90)
>DroSec_CAF1 80237 99 - 1
ACCUAUUCAUACCGCCUGCAAUGGCCGCCAAAACGCCGACAUACCCGGAUCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA
.............(((((...((((((((.......((.......))(((((((((......))))).)))).......).))))))).....))))). ( -33.00)
>DroSim_CAF1 87354 99 - 1
ACCUAUUCAUACCGCCCGCAAUGGCCGCCAAAACGCCGACAUACCCGGAUCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA
.............(((((...((((((((.......((.......))(((((((((......))))).)))).......).))))))).....))))). ( -35.20)
>DroEre_CAF1 81215 99 - 1
ACCUAUUCAUUCCGCCCAUAAUGGCCACCACCACGCCGACAUACCCUGACCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA
.............((((...((((..........((((.(...(((......)))...).))))(((((...........)))))...))))..)))). ( -28.00)
>DroYak_CAF1 83093 99 - 1
ACCUCUUCAUACCGCCCAUAAUGGCCAAAACCACGCCUACAUACCCCGACCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA
.............((((...((((..........(((((............)))))....((((((((...........))).)))))))))..)))). ( -27.90)
>DroMoj_CAF1 115867 93 - 1
AAUUAUUUAUUUGGCCAAAAAUGGC------GCCGCCUGUUUAUGCUGAUUUGGGCAAACUGGCCCGCGAUUUGUUCAAGCGUGGUUAUCAUCCUGGCC
............(((((...((((.------(((((..((((..((.(((((((((......))))).)))).))..)))))))))..))))..))))) ( -27.30)
>consensus
ACCUAUUCAUACCGCCCAUAAUGGCCGCCAAAACGCCGACAUACCCGGAUCUGGGCAAGCUGGCCCGCGAUCUCUUCAAGCGCGGCUACCAUCCGGGCA
.............((((...((((...................(((......))).....((((((((...........))).)))))))))..)))). (-23.95 = -23.32 +  -0.64)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:24 2006