Locus 3721

Sequence ID 2L_DroMel_CAF1
Location 10,844,171 – 10,844,281
Length 110
Max. P 0.588400
window5859

overview

Window 9

Location 10,844,171 – 10,844,281
Length 110
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 82.81
Mean single sequence MFE -38.06
Consensus MFE -26.49
Energy contribution -26.93
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -1.60
Structure conservation index 0.70
SVM decision value 0.11
SVM RNA-class probability 0.588400
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10844171 110 - 22407834
GAAGCAACGGCUGCGCAACUUGUUUCGCCGGAACAAAAUGCGCGCACGGCCCACUACAGUGGCCAGUGAUGCGAAUAAGGAGCAGCCGGAGCCACCUAAGCA---GGAGCCAA
...((..((((((((((..((((((.....))))))..)))((((((((((.((....)))))).))).))).........)))))))..))..(((....)---))...... ( -43.80)
>DroSec_CAF1 77599 110 - 1
GAAGCAACGAUUGCGUAACUUGUUUCGCCGGAACAAAAUGCGCGGCCGACCCACCACAGUGGCCAGUAAUCCGAAUAAGGAGCAGCCGGAGCCACCUAAGCC---GGAGCCAA
...((..((...(((((..((((((.....))))))..)))))(((....((((....))))((.((..(((......)))...)).)).)))........)---)..))... ( -31.20)
>DroSim_CAF1 84701 110 - 1
GAAGCAACGAUUGCGCAACUUGUUUCGCCGGAACAAGAUGCGCGGCCGACCCACCACAGUGGCCAGUAAUCCGAAUAAGGAGCAGCCGGAGCCACCUAAGCC---GGAGCCAA
...((..((...(((((.(((((((.....))))))).)))))(((....((((....))))((.((..(((......)))...)).)).)))........)---)..))... ( -36.80)
>DroYak_CAF1 80348 107 - 1
GAAGCAACGGCUGCGCAACUUGUUUCGCCGCAACAAGAUGCGCACCCGAGCCACCACAGUGCCGAAUAAGAAGGA------GUCUCCGGAGCCGGCGAAGCAAGAGGAGCCGA
.......(((((.(....((((((((((((((......)))((.((.(((.(.((.................)).------).))).)).)).))))))))))).).))))). ( -40.43)
>consensus
GAAGCAACGACUGCGCAACUUGUUUCGCCGGAACAAAAUGCGCGCCCGACCCACCACAGUGGCCAGUAAUCCGAAUAAGGAGCAGCCGGAGCCACCUAAGCA___GGAGCCAA
...((..((..((((((.(((((((.....))))))).))))))..))..((((....))))...................))....((..((............))..)).. (-26.49 = -26.93 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:22 2006