Locus 372

Sequence ID 2L_DroMel_CAF1
Location 1,162,391 – 1,162,481
Length 90
Max. P 0.768858
window585

overview

Window 5

Location 1,162,391 – 1,162,481
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 90.74
Mean single sequence MFE -32.98
Consensus MFE -26.69
Energy contribution -27.25
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.79
Structure conservation index 0.81
SVM decision value 0.52
SVM RNA-class probability 0.768858
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1162391 90 - 22407834
GCUGCGCCUAUUUGUUUGUUUAUUUUGGGACUCUGGCUGGGAAUGGGGGAGUGCUCCCAGAGCUCCCACUGCUCGCCCAUGCAAAUGGGC
.....((((((((((..........((((.....((((((((.((((((....))))))....)))))..)))..)))).)))))))))) ( -35.10)
>DroSec_CAF1 55907 90 - 1
GCUGCGCCUAUUUGUUUGUUUAUUUUGGGACUCUGGCUGGGAAUGGGGGAGUGCUCCCAGAGCUUCCAGUGCUCGCCCAUGCAAAUGGGC
.....((((((((((..........((((......(((((((.((((((....))))))....))))))).....)))).)))))))))) ( -35.20)
>DroSim_CAF1 50997 90 - 1
GCUGCGCCUAUUUGUUUGUUUAUUUUGGGACUUUGGCUGGGAAUGGGGGAGUGCUCCCAGAGCUCCCAGUGCUCGCCCAUGCAAAUGGGC
.....((((((((((..........((((......(((((((.((((((....))))))....))))))).....)))).)))))))))) ( -38.10)
>DroYak_CAF1 51210 81 - 1
GCUGCGCCUAUUUGUUUGUUUAUUUUGGGACUCUGGCCGGGAAUGGGGGAGUGCUCUC---------AGUGCUCAGCCAUGCAAAUGUGC
...((((..((((((..((((......))))..((((.(((..((((((....)))))---------)...))).)))).)))))))))) ( -23.50)
>consensus
GCUGCGCCUAUUUGUUUGUUUAUUUUGGGACUCUGGCUGGGAAUGGGGGAGUGCUCCCAGAGCUCCCAGUGCUCGCCCAUGCAAAUGGGC
.....((((((((((.......((..((........))..))(((((.(((((((............))))))).))))))))))))))) (-26.69 = -27.25 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:11 2006