Locus 3718

Sequence ID 2L_DroMel_CAF1
Location 10,832,472 – 10,832,582
Length 110
Max. P 0.574159
window5855

overview

Window 5

Location 10,832,472 – 10,832,582
Length 110
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 84.21
Mean single sequence MFE -36.77
Consensus MFE -25.48
Energy contribution -25.45
Covariance contribution -0.03
Combinations/Pair 1.08
Mean z-score -2.24
Structure conservation index 0.69
SVM decision value 0.08
SVM RNA-class probability 0.574159
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10832472 110 - 22407834
GCCGGCUGGCUUUGAGUGCAUAAGUCUAUUUUUAUAGCUAAAAGCCAGCCUUUGUCCAUCUAUUGUUUUCCUUUCGUCGCU-CUCAGGCAUUUUGAGUGGAGCCGAAGGAU
...((((((((((.(((..(((((......))))).))).))))))))))..................(((((.((..(((-(.((..(.....)..))))))))))))). ( -36.30)
>DroPse_CAF1 67161 111 - 1
CCCGGCUGGCUUUGAGUACAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUGCUGCUCCUGUUCCGGUGGCUACGAUCCUUAGGCAUUUGGAGUGGAUGGGGAGGGU
(((((((((((((.((((((.(((....))).))).))).)))))))))).((((((..((........))..)).))))((((((..(((.....)))..))))))))). ( -42.00)
>DroSec_CAF1 65955 99 - 1
GCCGGCUGGCUUUGAGUGCAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUCCAUCUAUUGUUUUCCUUCCGUCGCU-CUCAGGCAUUUUGAGUGG-----------
...((((((((((.(((..(((((......))))).))).))))))))))...........................((((-(...........))))).----------- ( -28.60)
>DroEre_CAF1 67082 110 - 1
GCCGGCUGGCUUUGAGUGCAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUCCAUUUGUUGUUUUCCUUCCGUCGCU-CUCAGGCAUUUUGAGUGGAGCCGAAGGAG
...((((((((((.(((..(((((......))))).))).))))))))))..................((((((.((..(.-(((((.....))))).)..)).)))))). ( -37.70)
>DroYak_CAF1 68845 110 - 1
GCCGGCUGGCUUUGAGUGCAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUCCAUCUAUUGUUUUCCUACCGUCGCU-CUCAGGCAUUUUGAGUGGAGCCGAAGGAG
...((((((((((.(((..(((((......))))).))).))))))))))..................((((..((..(((-(.((..(.....)..)))))))).)))). ( -34.00)
>DroPer_CAF1 66974 111 - 1
CCCGGCUGGCUUUGAGUACAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUGCUGCUCCUGUUCCGGUGGCUACGAUCCUUAGGCAUUUGGAGUGGAUGGGGAGGGU
(((((((((((((.((((((.(((....))).))).))).)))))))))).((((((..((........))..)).))))((((((..(((.....)))..))))))))). ( -42.00)
>consensus
GCCGGCUGGCUUUGAGUGCAUAAGUCUAUUUUUGUAGCUAAAAGCCAGCCUUUGUCCAUCUAUUGUUUUCCUUCCGUCGCU_CUCAGGCAUUUUGAGUGGAGCCGAAGGAU
.((((((((((((.(((..(((((......))))).))).))))))))))................................(((((.....))))).))........... (-25.48 = -25.45 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:18 2006