Locus 3717

Sequence ID 2L_DroMel_CAF1
Location 10,828,565 – 10,828,664
Length 99
Max. P 0.717634
window5854

overview

Window 4

Location 10,828,565 – 10,828,664
Length 99
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 72.53
Mean single sequence MFE -20.26
Consensus MFE -11.78
Energy contribution -12.82
Covariance contribution 1.04
Combinations/Pair 1.13
Mean z-score -1.62
Structure conservation index 0.58
SVM decision value 0.39
SVM RNA-class probability 0.717634
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10828565 99 - 22407834
GCCAAUAACUUUUUUUAUUGGUUG-GCUUUUGGUUAACUUUUUGUUGACAUUUGGCAUAAAAAGUUGGAAA---CACCUACGCA----UACAACUUUUAAAUAAGCU
((((((((......))))))))..-(((....((((((.....))))))....)))...((((((((....---..........----..))))))))......... ( -22.39)
>DroSec_CAF1 61959 103 - 1
GCCAAUAACUUUUUUUAUUGGCUG-ACUUGUGGUUAACUUUUUGUUGACAUUUCGCAUAAAAAGUUGGGAA---CACCUACGCAUGCAUAUAACUUUUAAAUAAGCA
((((((((......)))))))).(-.(((((.((((((.....)))))).....((((.....((.((...---..)).))..)))).............)))))). ( -23.80)
>DroSim_CAF1 68852 103 - 1
GCCAAUAACUUUUUUUAUUGGCUG-ACUUGUGGUUAACUUUUUGUUGACAUUUCGCAUAAAAAGUUGGGAA---CACCUAGGCAUGCAUAGAACUUUUAAAUAAGCA
((((((((......)))))))).(-.(((((.((((((.....)))))).....((((....((.((....---)).))....)))).............)))))). ( -23.60)
>DroEre_CAF1 63236 95 - 1
GCCAAUAACUUU-UUUAUUG------CUUUUGGUUAACUUUCUGUUGACAUUUCACAUAAAACUUGGGAA----UACCUGCAA-CUUAAGCAACUUUACAAUAAGUC
............-....(((------(((..(((((((.....))))))(((((.((.......))))))----)........-)..)))))).............. ( -14.40)
>DroYak_CAF1 64903 83 - 1
GCCAAUAACUUU-UUUAUUGGUUAGCCUUUUGGUUAACUUUUCGUUGAUGUUUCACAUAAGAAGUUGGAAAGUAAGCAUGCAA-C----------------------
((((((((....-.))))))))(((((....)))))((((((((...(((.....))).......))))))))..........-.---------------------- ( -17.10)
>consensus
GCCAAUAACUUUUUUUAUUGGCUG_ACUUUUGGUUAACUUUUUGUUGACAUUUCGCAUAAAAAGUUGGAAA___CACCUACGCAC__AUACAACUUUUAAAUAAGCA
((((((((......))))))))...........(((((((((((((((....))).))))))))))))....................................... (-11.78 = -12.82 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:17 2006