Locus 3712

Sequence ID 2L_DroMel_CAF1
Location 10,814,098 – 10,814,191
Length 93
Max. P 0.523001
window5849

overview

Window 9

Location 10,814,098 – 10,814,191
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 90.50
Mean single sequence MFE -23.46
Consensus MFE -17.03
Energy contribution -17.09
Covariance contribution 0.06
Combinations/Pair 1.17
Mean z-score -1.65
Structure conservation index 0.73
SVM decision value -0.02
SVM RNA-class probability 0.523001
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10814098 93 - 22407834
GCAGCCGGCGCAGAGUCAAGAAAGCAAUGGCAUCCCAAAGGAAAAUAAGAAAUGGAAGCCAGGCAUGCUGAAGUUUCAACUAGGGAAUACCCU
(((((((((.....)))..........((((.(((..................))).))))))).))).............((((....)))) ( -23.17)
>DroSec_CAF1 47664 93 - 1
GCAGCCGGCGCAGAGCCAAGAAAACAAUGGCAUCCCAAAGGAAAAUAAGAAAUGGAAGCCAGGCAUGCUGAAGUUUCAACUAGGGAAUACCCU
(((((((((.....)))..........((((.(((..................))).))))))).))).............((((....)))) ( -25.87)
>DroEre_CAF1 48609 93 - 1
GCAGCCGGCGCAGAGCCAAGAAAACAAUGGCAUCCCCAAGGAAAAUAAUAAAUGGGAAUCACGCGUGCUGAAGCUCGAACUAGGGAAUACCCU
.((((..((((...((((.........))))...((((..............))))......))))))))...........((((....)))) ( -23.34)
>DroYak_CAF1 49771 93 - 1
CCAGCCGGCGCAGAGCCAAGAAAACAAUGGCAUCCCAAAGGAAAAUAAGAAAUGGGAAUCCUCCAUGCUGAAGCUCGAACUAGGGAAUACCCU
.((((.(((.....))).........((((..(((((...............))))).....))))))))...........((((....)))) ( -21.46)
>consensus
GCAGCCGGCGCAGAGCCAAGAAAACAAUGGCAUCCCAAAGGAAAAUAAGAAAUGGAAACCAGGCAUGCUGAAGCUCCAACUAGGGAAUACCCU
.((((.(((.....)))..........((((.(((..................))).)))).....))))...........((((....)))) (-17.03 = -17.09 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:12 2006