Locus 371

Sequence ID 2L_DroMel_CAF1
Location 1,162,116 – 1,162,210
Length 94
Max. P 0.500000
window584

overview

Window 4

Location 1,162,116 – 1,162,210
Length 94
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.72
Mean single sequence MFE -36.86
Consensus MFE -19.84
Energy contribution -21.64
Covariance contribution 1.80
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.54
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1162116 94 + 22407834
GACUGGAUAGUUCCGCGCAGCUCCUCGUUGCUGGAAAGGGUA--------------------GGGGGUUAGGGUUAGUGGCUUAAAAUUAGCCUCGCUGCGGACCAUUAAUCAU------
...(((.((((((((((((((((((..((.((....))))..--------------------))))))).((((((((........)))))))).)).)))))..)))).))).------ ( -30.30)
>DroSec_CAF1 55612 114 + 1
GACUGAAUCGUUCCGCGCAGCUCCUCGUUGCUGCAAAGGGCAAUGGUGGUGAGGGGGGCUGAGGGGGUUAGGGUUAGUGGCUUAAAAUUAGCCUCGCUGCGGACCAUUAAUCAU------
.........(.(((((.(((((((((.(..(..(...........)..)..))))))))))((((((((((..((((....))))..)))))))).))))))).).........------ ( -41.60)
>DroSim_CAF1 50710 106 + 1
GACUGGAUCGUUCCGCGCAGCUCCUCGUUGCUGCAAAGGGCAAUGGUGGUGGGGA--------GGGGUUAGGGUUAGUGGCUUAAAAUUAGCCUCGCUGCGGACCAUUAAUCAU------
((...(((.((.((((((((((((((.(..(..(...........)..)..).))--------)))))).((((((((........)))))))).)).)))))).)))..))..------ ( -38.70)
>DroEre_CAF1 49534 99 + 1
GACUGUAUGGUUCCGCUCAGCAUAUCGUUGCUGCAAAGGAGU--------------------GGGGUUUAGGG-AAGUGCCUUAAAAUUAGCCUCGCUCCGGACCAUUAAUCAUCGGAUC
((.((.(((((((....(((((......)))))....(((((--------------------(((((((((((-.....)))))).....))))))))))))))))))).))........ ( -36.70)
>DroYak_CAF1 50911 94 + 1
GACUGGAUGGUUCCGCGCAGCUCCUCGUUGCUGCAAAGGAGU--------------------GGGGGUUAGGG-AAGUGGCUUAAAAUUAGCCUCGCUCCGGACCAUUAAUCAUA-----
((...((((((((...(((((........)))))...(((((--------------------((((.((((..-(((...)))....)))))))))))))))))))))..))...----- ( -37.00)
>consensus
GACUGGAUCGUUCCGCGCAGCUCCUCGUUGCUGCAAAGGGCA____________________GGGGGUUAGGGUUAGUGGCUUAAAAUUAGCCUCGCUGCGGACCAUUAAUCAU______
.........(.((((((((((........))))).............................((((((((..((((....))))..))))))))...))))).)............... (-19.84 = -21.64 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:10 2006