| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,800,880 – 10,800,978 |
| Length | 98 |
| Max. P | 0.758094 |
| Location | 10,800,880 – 10,800,978 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 89.76 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -12.88 |
| Energy contribution | -12.92 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.758094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10800880 98 - 22407834 -GUG--------UGCAACUGUGUGCGGGC--GCAGACAUGAAGUGAAUAAGAAAUUGGAAAAGCACUAAAACAUAACAUAUAUGUAAAAAAAAAUAUAUUCAGAAA--AAA -((.--------(((..(((....)))..--))).)).(((((((..(((....)))......))))...(((((.....)))))..............)))....--... ( -16.20) >DroSec_CAF1 34478 100 - 1 AGUG--------UGCAACUGUGUGCGGGCGCGCAGACAUGAAGUGAAUAAGAAAUUGGAAAAGCACUAAAACAUAACAUAUAUGUAAA---AUAUAUAUUCAGAGAAAAAA ...(--------(((..(((((((....)))))))............(((....))).....))))...........((((((.....---)))))).............. ( -18.80) >DroSim_CAF1 39702 100 - 1 AGUG--------UGCAAUUGUGUGCGGGCGCGCAGACAUGAAGUGAAUAAGAAAUUGGAAAAGCACUAAAACAUAACAUAUAUGUAAA---AUAUAUAUUCAGAAAAAAAA ...(--------(((...(((.((((....)))).))).........(((....))).....))))...........((((((.....---)))))).............. ( -17.10) >DroEre_CAF1 35317 97 - 1 -GCG--------UGCGACUGUGUGCGGGC--GCAGACAUGAAGUGAAUAAGAAAUUGGAAAAGCACUAAAACAUAACAUAUAUGUAAA---AUAUAUAUUCGAAAAAAAAA -..(--------(((..((((((....))--))))............(((....))).....))))...........((((((.....---)))))).............. ( -15.60) >DroYak_CAF1 35589 105 - 1 -GUGUCCGACUGUGCGACUGUGUGCGGGC--GCAGACAUGAAGUGAAUAAGAAAUUGGAAAACCACUAAAACAUAACAUAUAUGUAAA---AUAUAUAUUCAAAAAAAAAA -(((((((...(..(....)..).)))))--))..........((((((......(((....))).....(((((.....)))))...---.....))))))......... ( -19.30) >consensus _GUG________UGCAACUGUGUGCGGGC__GCAGACAUGAAGUGAAUAAGAAAUUGGAAAAGCACUAAAACAUAACAUAUAUGUAAA___AUAUAUAUUCAGAAAAAAAA ..................(((.(((......))).)))(((((((..(((....)))......))))..........((((((((......)))))))))))......... (-12.88 = -12.92 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:02 2006