Locus 3702

Sequence ID 2L_DroMel_CAF1
Location 10,798,611 – 10,798,709
Length 98
Max. P 0.872435
window5836

overview

Window 6

Location 10,798,611 – 10,798,709
Length 98
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.43
Mean single sequence MFE -26.57
Consensus MFE -18.37
Energy contribution -19.00
Covariance contribution 0.63
Combinations/Pair 1.29
Mean z-score -2.82
Structure conservation index 0.69
SVM decision value 0.88
SVM RNA-class probability 0.872435
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10798611 98 + 22407834
GGCAUGGCU-GCC-UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUAUAUCUAAAGUGGCAACGGCUAUAUUGCUAUCCACAUAUAUUUUCAUUCAUAUCUC
((((..(((-(..-...))))...))))((((((((((((.(((((.......))))).))(((......))).............)))))))))).... ( -26.80)
>DroSec_CAF1 32317 97 + 1
GGCAUGGCU-GCC-UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUAUAUCUAAAGUGGCAACAGCUAUG-UGCUAGCCAUAUAUAUUUUCAUUCAUUGCUC
((((..(((-(..-...))))...)))).(((((((((((((((((((.....(((((....))))))-)).))))))).......)))))))))..... ( -27.91)
>DroSim_CAF1 37551 97 + 1
GGCAUGGCU-GCC-UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUAUAUCUAAAGUGGCAACGGCUAUG-UGCUAGCCAUAUAUAUUUUCAUUCAUAUCUC
((((..(((-(..-...))))...))))((((((((((((.(((((.......))))).))(((((..-...))))).........)))))))))).... ( -31.00)
>DroEre_CAF1 33076 94 + 1
GGCAUGGUU-GCC-UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUGUAUCUAAAGUGGCAACAGCUAUG-UGCUAGCCAUAUA--UU-UCAUUCAUUUGCC
((((....)-)))-...........((..(((((((((((((((((((.....(((((....))))))-))).))))))...--.)-))))))))..)). ( -31.20)
>DroWil_CAF1 48787 82 + 1
GGCUUGGUUUGCCAUUUUAAUAUUUGCCUAUGAAUGAAGU----UUAUUUAUAGUGGUAACGGCCAUU-C--UG----------UC-CCCUUUGUUUGCU
(((.......)))............((((((((((((...----)))))))))).((..((((.....-)--))----------).-.)).......)). ( -15.80)
>DroYak_CAF1 33292 95 + 1
GGCAUGGUU-GCC-UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUAUAUCUAAAGUGGCAACAGCUAUG-UGCUAGCCAUAUA--UUUUCAUUCAUUUCUU
(((...(((-(((-((((((.....(((............))).....)))))).))))))(((....-.))).))).....--................ ( -26.70)
>consensus
GGCAUGGCU_GCC_UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUAUAUCUAAAGUGGCAACAGCUAUG_UGCUAGCCAUAUA__UUUUCAUUCAUUUCUC
((((..(((.........)))...)))).((((((((((((((((........(((((....))))).....))))))).......)))))))))..... (-18.37 = -19.00 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:00 2006