Locus 3701

Sequence ID 2L_DroMel_CAF1
Location 10,791,614 – 10,791,706
Length 92
Max. P 0.998424
window5835

overview

Window 5

Location 10,791,614 – 10,791,706
Length 92
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 77.10
Mean single sequence MFE -37.73
Consensus MFE -24.06
Energy contribution -24.25
Covariance contribution 0.19
Combinations/Pair 1.14
Mean z-score -2.80
Structure conservation index 0.64
SVM decision value 3.10
SVM RNA-class probability 0.998424
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10791614 92 - 22407834
GUCAGAUGGGAGAAG---AAGGAGCAGGAGGAGCUAG------AGGGGCCUACUCCUCUGGCGCACUCAGUUAGUCCAAAGCCCUUUCCUUUCUUUGGCUU
((((((.(..((..(---((((.((..(((..(((((------(((((....))))))))))...))).(......)...))))))).))..))))))).. ( -36.90)
>DroSec_CAF1 25402 85 - 1
GCCAGAUGGGAGGAGG---------------AGCUGGAGCU-UAGGGGCUUCCUUCUCUGGCGGACUCAGUUAGUCCAAAGCCCUUUCCUUUCUUUGGCUU
((((((.(..((((((---------------(((....)))-).(((((((((......)).(((((.....))))).))))))))))))..))))))).. ( -38.60)
>DroSim_CAF1 27024 101 - 1
GCCAGAUGGGAGGAGGAGCAGGAGCAGGAGGAGCUGGAGCUGUAGGGGCUUCCUUCUCUGGCGGACUCAGUUAGUCCAAAGCCCUUUCCUUUCUUUGGCUU
((((((.(..((((((.((....((.(((((((..((((((.....))))))))))))).))(((((.....)))))...))))..))))..))))))).. ( -46.10)
>DroYak_CAF1 26383 86 - 1
GUCAGAUGGGCGGAGAAGAAGG---------------AGCAGGAGGGGCAUUCUCUUCUGGCGGACUCAGUUAGUCCAAAGCCCUUUCCUUUCUUUGGCUU
.......((.((((((((((((---------------.(((((((((.....)))))))...(((((.....)))))...)))))))...))))))).)). ( -29.30)
>consensus
GCCAGAUGGGAGGAGG__AAGG_________AGCUGGAGCU_UAGGGGCUUCCUCCUCUGGCGGACUCAGUUAGUCCAAAGCCCUUUCCUUUCUUUGGCUU
((((((.(((((((((...........................(((((......)))))((((((((.....)))))...))).))))))))))))))).. (-24.06 = -24.25 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:59 2006