Locus 370

Sequence ID 2L_DroMel_CAF1
Location 1,161,533 – 1,161,653
Length 120
Max. P 0.548278
window583

overview

Window 3

Location 1,161,533 – 1,161,653
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.58
Mean single sequence MFE -55.86
Consensus MFE -43.80
Energy contribution -46.00
Covariance contribution 2.20
Combinations/Pair 1.10
Mean z-score -1.45
Structure conservation index 0.78
SVM decision value 0.03
SVM RNA-class probability 0.548278
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1161533 120 + 22407834
CAGCUUGGCUUCGAUCUGGGACAGCAGCUCCGGUGCCUUGGGCAGACCCUCGAGGCGCUUCUGGGUCUGAUCGGACGCCUUCUGGCUGCUCUCCUUGAGGGCGGCCACGCUGGCCGACAA
((((..((((((((((..((((..(((....(((((((((((......))))))))))).))).))))))))))).)))...(((((((((((...))))))))))).))))........ ( -60.50)
>DroSec_CAF1 55029 120 + 1
CAGCUUGGCCUCGAUCUGGGACAGCAGCUCCGGUGCCUUGGGCAGACUCUCGAGGCGCUUCUGUGUCUGGUCGGCCGCCUUCUGGCUGCUCUCCUUGAGGGCGGCCACGCUGGCCGACAA
(((.(((....))).)))(((((.(((....(((((((((((......))))))))))).)))))))).(((((((((....(((((((((((...))))))))))).)).))))))).. ( -61.70)
>DroSim_CAF1 50127 120 + 1
CAGCUUGGCCUCGAUCUGGGACAGCAGCUCCGGUGCCUUGGGCAGACCCUCGAGGCGCUUCUGUGUCUGGUCGGCCGCCUUCUGGCUGCUCUCCUUGAGGGCGGCGACGCUGGCCGACAA
..(.((((((.(((((..(((((.(((....(((((((((((......))))))))))).)))))))))))))(((((((((.((.......))..)))))))))......))))))).. ( -58.50)
>DroEre_CAF1 48914 120 + 1
CAGCUUGGCGUCGAUCUGGGCCAGCAGCUCCGGUGCCUUGGGCAGAGCCUCGACGGUCUUCUGGGUCUGGUCGGCUGCCUUCUGGCUGCUCUCCUUCAGGGAGGCCACACUGGCCGACAG
(((((.((((((((((.((.((((.((..(((.((....((((...)))))).))).)).)))).)).))))))).)))....)))))...(((.....)))((((.....))))..... ( -49.20)
>DroYak_CAF1 50333 120 + 1
CAGCUUGGCCUCGAUCUGGGCCAGCAACUGCGGUGCCUUGGGAAGAUCCUCGAAGCUCUUCUGGGUCUGGUCGGCUGCCUUCUGGCUGCUCUCCUUCAGGGAGGCCACACUGGCCGACAG
..(((.(((((......))))))))..((((....(((((((.((((((..(((....))).))))))((..(((.(((....))).)))..))))))))).((((.....))))).))) ( -49.40)
>consensus
CAGCUUGGCCUCGAUCUGGGACAGCAGCUCCGGUGCCUUGGGCAGACCCUCGAGGCGCUUCUGGGUCUGGUCGGCCGCCUUCUGGCUGCUCUCCUUGAGGGCGGCCACGCUGGCCGACAA
((((.(((((.(..((.((((.(((((((..((((((..((.(((((((..(((....))).))))))).)))).))))....))))))).)))).))..).))))).))))........ (-43.80 = -46.00 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:09 2006