Locus 3698

Sequence ID 2L_DroMel_CAF1
Location 10,786,994 – 10,787,087
Length 93
Max. P 0.762953
window5832

overview

Window 2

Location 10,786,994 – 10,787,087
Length 93
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 75.69
Mean single sequence MFE -25.87
Consensus MFE -15.82
Energy contribution -16.74
Covariance contribution 0.92
Combinations/Pair 1.21
Mean z-score -1.52
Structure conservation index 0.61
SVM decision value 0.51
SVM RNA-class probability 0.762953
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10786994 93 - 22407834
UUCAGCGCUGUGCUGGCGAAAAAAGUUAGCGAGUUUUGGUCAGAAA-----AAAGCGGUGUGGCCUAGUAUGCAAUUUUUUUUUUUUAAUCAGGCCUG
..((.((((...(((((.((((..(....)...)))).)))))...-----..)))).)).(((((.((...................)).))))).. ( -23.91)
>DroPse_CAF1 22655 87 - 1
UUAAGCGCUUUUCCAGCGCUAACUUUAAGAGAACC-CG-CCACCAGGGAGAACUUCGUUAUGGGCAUGCCUUCGCU-----UU-UCAAA---UGUUAG
...((((((.....))))))........(((((((-(.-......)))........((...(((....)))..)))-----))-))...---...... ( -18.70)
>DroSec_CAF1 20738 88 - 1
UUCAGCGCUGUGCUGGCGAAAAAAGUUAGCGAGCU-UGGCCACAAA-----AAAGCGGUGUGGACUAGUAUGCUAUUU----UUUUUAAUCAGGCCUG
..(((.((....((((..(((((((.(((((.(((-...(((((..-----.......)))))...))).))))).))----)))))..))))))))) ( -25.00)
>DroSim_CAF1 22352 92 - 1
UUCAGCGCUGUGCUGGCGAAAAAAGUUAGCGAGUU-UGGCCACAAA-----AAAGCGGUGUGGCCAAGUAUGCAAUUUUUUUUUUUUAAUCAGGCCUG
..(((.(((........((((((((((.(((..((-((((((((..-----.......))))))))))..))))))))))))).........)))))) ( -29.83)
>DroEre_CAF1 21736 86 - 1
UUCAGCGCUGUGCUAGCGAAAAAAGUUAGCGAGCU-UGGCCACAAA-----ACAGCGGUGUGGCCUAGAGUGCA-U-----UUUUUUAAUCAGGACUG
....(((((.(((((((.......)))))))..((-.(((((((..-----.......))))))).))))))).-.-----................. ( -28.00)
>DroYak_CAF1 21567 87 - 1
UUCAGCGCUGUGCUGGCGAAAAAAGUUAGCGAGCU-UGGCCACAAA-----AAAGCGGUGUGGCCUAGUAUGCGCU-----UUUUUUAAUCAGGCCUG
...(((((..(((((((.......))))))).(((-.(((((((..-----.......))))))).)))..)))))-----................. ( -29.80)
>consensus
UUCAGCGCUGUGCUGGCGAAAAAAGUUAGCGAGCU_UGGCCACAAA_____AAAGCGGUGUGGCCUAGUAUGCAAU_____UUUUUUAAUCAGGCCUG
....(((((.(((((((.......))))))))))...(((((((..............)))))))......))......................... (-15.82 = -16.74 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:56 2006