Locus 3696

Sequence ID 2L_DroMel_CAF1
Location 10,778,225 – 10,778,320
Length 95
Max. P 0.993070
window5830

overview

Window 0

Location 10,778,225 – 10,778,320
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 94.32
Mean single sequence MFE -19.01
Consensus MFE -17.29
Energy contribution -17.79
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.91
SVM decision value 2.37
SVM RNA-class probability 0.993070
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10778225 95 - 22407834
-CUAUUGCAGCGGCAAAUCGCGUCACAUUUACAGGCAUUUGCAUAAUAACUUUCUGCC--UUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU
-..((((((..(((((((.((.............))))))))........(((((((.--..)))))))...................)..)))))). ( -17.92)
>DroSec_CAF1 12068 96 - 1
ACCAUUGCAGCGGCAAAUCGCGUCACAUUUACAGGCAUUUGCAUAAUAACUUUCUGCC--UUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU
...((((((..(((((((.((.............))))))))........(((((((.--..)))))))...................)..)))))). ( -18.02)
>DroSim_CAF1 12489 96 - 1
ACCAUUGCAGCGGCAAAUCGCGUCACAUUUACAGGCAUUUGCAUAAUAACUUUCUGCC--UUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU
...((((((..(((((((.((.............))))))))........(((((((.--..)))))))...................)..)))))). ( -18.02)
>DroEre_CAF1 13135 95 - 1
-CCACUGCAGCGGCAAAUCGCGUCACAUUUACGGGCAUUUGCAUAAUAACUUUCUGCC--UUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU
-....((((..((((((((.(((.......))).).))))))........(((((((.--..)))))))...................)..))))... ( -19.00)
>DroYak_CAF1 12589 95 - 1
-CCAUUGCAGCGGCAAAUCGCGUCACAUUUACACGCAUUUGCAUAAUAACUUUCUGCC--UUGCGGAAAACAAUCAAAACCUAAUUUACAAUGCAAUU
-..((((((..(((((((.((((.........))))))))))........(((((((.--..)))))))...................)..)))))). ( -21.50)
>DroAna_CAF1 11688 97 - 1
-CCUUUGCAACACCAAAUCGCCUCACAUUUACUGGCAUUUGCAUAAUAAUUUUCUGCUUUUUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU
-...(((((....(((((.(((...........))))))))........((((((((.....)))))))).....................))))).. ( -19.60)
>consensus
_CCAUUGCAGCGGCAAAUCGCGUCACAUUUACAGGCAUUUGCAUAAUAACUUUCUGCC__UUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU
...((((((...((((((.((.............))))))))........(((((((.....)))))))......................)))))). (-17.29 = -17.79 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:54 2006