Locus 3695

Sequence ID 2L_DroMel_CAF1
Location 10,776,345 – 10,776,461
Length 116
Max. P 0.883911
window5829

overview

Window 9

Location 10,776,345 – 10,776,461
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.55
Mean single sequence MFE -18.15
Consensus MFE -7.04
Energy contribution -7.64
Covariance contribution 0.60
Combinations/Pair 1.13
Mean z-score -2.05
Structure conservation index 0.39
SVM decision value 0.93
SVM RNA-class probability 0.883911
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10776345 116 - 22407834
UAAUCUGCACAAGCAUUUUUCU---AGAAUUAAAGUGAACUAUGAGGAAAAAUUCUUGGAAGCAAGU-UAAGCUACAAAAAUAUUUACUAAUUAAAGUAGUGCAAAAAAACUUUAAAAAA
.....(((((.(((((((((((---....(((.((....)).))))))))))).((((....)))).-...)))...........((((......)))))))))................ ( -20.10)
>DroSec_CAF1 10261 112 - 1
UAAUCUGCACAAGCAUUUUUUA---AGAAUUAAAGUGAACUAACAGGAAACAUUCUUAGAAGCAAGUAUAAGAUACACAAAUUUCUACUAAUUAAAGUAGUGCAAAUAAACUAAA-----
.....(((((..((...(((((---(((((...((....))....(....)))))))))))))......................((((......)))))))))...........----- ( -19.10)
>DroSim_CAF1 10678 104 - 1
UAAUCUGCACAAGCAUUUUAAGAAUAGAAUUAAAGUGAACUAAGGGGAAAAAUUCUUGGAAGCAAGUAGUAG---UGCAAAU-------------AAUAGUGCAAAUAAACUUAAAAAAA
.....(((((...((((((((........))))))))..(((((((......)))))))..(((........---)))....-------------....)))))................ ( -19.30)
>DroEre_CAF1 11305 117 - 1
UAAUCUGCACAAGCAUUUUUCC---AGAAUUAAAGUCAACUAAAAGGACAAAUUCUUAUACAUUUGUAUAAACUACACGAGUUUCUACUAAUUAAAACAGUGCACAUAAACUCAAAAAAG
.....((((((((.((((.(((---....................))).)))).)))........(((.(((((.....))))).)))...........)))))................ ( -14.85)
>DroYak_CAF1 10744 116 - 1
UAAUCUGCACAGGCAUUUUUCU---AGAAUUAAAGUGAAGUGAAAGGA-AAAUUCUUGGAAACAAGUAUAAGCUAUAGGAAUUUCUACUAAUUAAAGCAGUAUAAAUAAACUCGAAAAAA
....((((...(((((((((((---...(((.......)))...))))-)))).((((....)))).....))).(((.........)))......)))).................... ( -17.40)
>consensus
UAAUCUGCACAAGCAUUUUUCU___AGAAUUAAAGUGAACUAAAAGGAAAAAUUCUUGGAAGCAAGUAUAAGCUACACAAAUUUCUACUAAUUAAAGUAGUGCAAAUAAACUCAAAAAAA
.....(((((...((((((............)))))).................((((....)))).................................)))))................ ( -7.04 =  -7.64 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:53 2006