Locus 3693

Sequence ID 2L_DroMel_CAF1
Location 10,767,128 – 10,767,218
Length 90
Max. P 0.832568
window5826

overview

Window 6

Location 10,767,128 – 10,767,218
Length 90
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 91.23
Mean single sequence MFE -21.82
Consensus MFE -18.85
Energy contribution -18.97
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.31
Structure conservation index 0.86
SVM decision value 0.72
SVM RNA-class probability 0.832568
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10767128 90 - 22407834
C-GACUCCACUGGCCAUACUUUUCACAUCAACUACAUUCGUACGCACAA----AGUGCAGGCAAGAAGGGAUUUCCCUUUAAAAAUAAAUGUGAA
.-.....(((..(((.................(((....))).((((..----.)))).)))..((((((....))))))..........))).. ( -19.40)
>DroSec_CAF1 903 95 - 1
CGGACUCCACUGGCCUCACUUUUCAUAUCAAGUACAUUCGUACGCACAAAUAAAGUGCAGGCAACAAGGGAUUUCUCUUUCAAAAUAAAUGUGAA
.(((.(((.((.((((((((((.........((((....))))........)))))).))))....))))).))).................... ( -22.83)
>DroSim_CAF1 920 95 - 1
CGGACUCCACUGGCCUCACUUUUCAUAUCAAGUACAUUCGUACGCACAAAUGAAGUGCAGGCAACAAGGGAUUUCUCUUUCAAAAUAAAUGUGAA
.(((.(((.((.((((((((((.........((((....))))........)))))).))))....))))).))).................... ( -23.23)
>consensus
CGGACUCCACUGGCCUCACUUUUCAUAUCAAGUACAUUCGUACGCACAAAU_AAGUGCAGGCAACAAGGGAUUUCUCUUUCAAAAUAAAUGUGAA
.......(((..(((................((((....))))((((.......)))).)))...(((((....)))))...........))).. (-18.85 = -18.97 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:50 2006