Locus 3690

Sequence ID 2L_DroMel_CAF1
Location 10,753,570 – 10,753,660
Length 90
Max. P 0.796370
window5822

overview

Window 2

Location 10,753,570 – 10,753,660
Length 90
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.79
Mean single sequence MFE -19.71
Consensus MFE -12.62
Energy contribution -13.43
Covariance contribution 0.81
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.64
SVM decision value 0.60
SVM RNA-class probability 0.796370
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10753570 90 - 22407834
GCAAAUGCUGCGUU---------------AUAACUCAUAGACGAAAGCAAACAUCAAAUCACCGGGCAUUUGCAAACAUCCUGGGCCGUCUAAGAAUAGCCCAAA
((((((((((.((.---------------...)).)...(.(....))................)))))))))........(((((..(......)..))))).. ( -21.20)
>DroSec_CAF1 8679 90 - 1
GCAAAUGCUGCGUU---------------AUAACUCAUAGACGAAAGCAAACAUCAAACUACCGGGCAUUUGCAAACAUCCUGGGCCGUCUAAGAAUAGCCCAAA
(((((((((..((.---------------............(....).............))..)))))))))........(((((..(......)..))))).. ( -21.57)
>DroSim_CAF1 7851 90 - 1
GCAAAUGCUGCGUU---------------AUAACUCAUAGACGAAAGCAAACAUCAAACCACCGGGCAUUUGCAAACAUCCUGGGCCGUCUAAGAAUAGCCCAAA
((((((((((.((.---------------...)).)...(.(....))................)))))))))........(((((..(......)..))))).. ( -21.20)
>DroEre_CAF1 7868 103 - 1
GCGAAUGCUGCGCUAAAUGCCAAGCGACCAUAAUUCAU--ACGAAACCAAACAUCAAACCACUGGGCAGUUGCAAACAUCCUGGGCCGUCUAAGAAUAGCCCAAA
((((.((((.((((........)))).......(((..--..)))...................)))).))))........(((((..(......)..))))).. ( -21.40)
>DroYak_CAF1 8121 105 - 1
GCGAAUGCUGUGCUAAAUGCCAAGCGACCAUAAUUCAUAGACGAAAGCAAACAUCAAACCACUGGGCAUUUGCAAACAUCCUGGGCCGUCUAAGAAUAACCCCAA
(((((((((.((((........)))).............(.(....))................)))))))))........((((...((...)).....)))). ( -19.70)
>DroAna_CAF1 7928 93 - 1
GCAAAUGCC------------AAACGGCCAUAAAUUUAAUCCAAAACUAAACAUUAAACCGCUCAGCAUUUGCAAACAUCCUGGGCCAGCUAAAAAUAACCGAAA
((((((((.------------...(((.......((((.........)))).......)))....))))))))........(((...............)))... ( -13.20)
>consensus
GCAAAUGCUGCGUU_______________AUAACUCAUAGACGAAAGCAAACAUCAAACCACCGGGCAUUUGCAAACAUCCUGGGCCGUCUAAGAAUAGCCCAAA
(((((((((.......................................................)))))))))........(((((.((......)).))))).. (-12.62 = -13.43 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:46 2006