| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,159,827 – 1,159,947 |
| Length | 120 |
| Max. P | 0.598301 |
| Location | 1,159,827 – 1,159,947 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.78 |
| Mean single sequence MFE | -40.25 |
| Consensus MFE | -27.32 |
| Energy contribution | -27.52 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.598301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1159827 120 - 22407834 CACGAUGCCCAGCUCCGGCUCCGGGGCCUCGAACCCGAGUCGCUUGCUCAGCAUGUCGCUGAUCUGCUCCGUCAGCGCUUCGCGCUUCUGCUUAAGUAGGCUCUGCACCAACUCCGUCUU .(((((((..(((..((((((.(((........)))))))))...)))..))))...((.((((((((..((.(((((...)))))...))...)))))).)).))........)))... ( -38.60) >DroPse_CAF1 53349 117 - 1 AAUGAUGCCUAAGUCCGGGUCCGGCGCAUCAUAGCCCAGCCGCUUGGCCAGCCUUAAGGUUAUCUGUUCGGUGAGGGACUCCCGCUUCUGC---AGCAGACCCUUUACCAGAGGCGUCUC ...(((((((..((..(((((..(((((....(((...((((..(((..((((....))))..)))..))))..(((...))))))..)))---.)).)))))...))...))))))).. ( -41.00) >DroSec_CAF1 53353 120 - 1 CACGAUGCCCAGCUCCGGCUCCGGGGCUUCGAACCCGAGUCGCUUGCUCAGCAUGUCGCUGAUCUGCUCCGUCAGCGCUUCGCGCUUCUGCUUAAGUAAACUCUGCACCAAGUCCGUCUC ....((((..(((..((((((.(((........)))))))))...)))..))))(.(((((((.......))))))))..((.((((.(((...((....))..)))..)))).)).... ( -36.00) >DroEre_CAF1 47228 120 - 1 CACGAUGCCCAGCUCCGGCUCCGGGGCCUCGAACCCGAGUCGCUUGCUCAGCAUGUCGCUGAUCUGCUCCGUCAGCGCUUCGCGCUUUUGCUUGAGUAGACUCUGCACCAAUUCCGUCUC .(((((((..(((..((((((.(((........)))))))))...)))..))))...((.(((((((((((..(((((...)))))..))...))))))).)).))........)))... ( -42.70) >DroYak_CAF1 48628 120 - 1 CACUAUGCCCAGCUCCGGCUCCGGGGCCUCGAACCCGAGUCGCUGGCUCAGCAUGUCGCUGAUCUGCUCCGUCAGCGCUUCGCGCUUCUGCUUAAGUAGACUCUGCACCAAUUCCGUCUC ......((..(((...(((((.(((........))))))))((((((..((((.(((...))).))))..)))))))))..))((.(((((....)))))....)).............. ( -39.50) >DroAna_CAF1 52950 120 - 1 AAUAAUUCCCAAAUCCGGUUCGGGUGCAACGUAACCCAGCCGCUUUGUCAGCAUUGAGUUAAUCUGCUCGGUUAGCGCUUCGCGCUUCUGGCUGAGCAGAUUCUGCACCACUUCCGAAUU ...............(((....((((((...((((.(((..(((.....))).))).))))(((((((((((((((((...)))))...))))))))))))..))))))....))).... ( -43.70) >consensus CACGAUGCCCAGCUCCGGCUCCGGGGCCUCGAACCCGAGUCGCUUGCUCAGCAUGUCGCUGAUCUGCUCCGUCAGCGCUUCGCGCUUCUGCUUAAGUAGACUCUGCACCAAUUCCGUCUC ....((((..(((..(((((.((((........)))))))))...)))..))))...((.((((((((..((.(((((...)))))...))...)))))).)).)).............. (-27.32 = -27.52 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:08 2006