| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,740,628 – 10,740,720 |
| Length | 92 |
| Max. P | 0.971981 |
| Location | 10,740,628 – 10,740,720 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 84.33 |
| Mean single sequence MFE | -21.45 |
| Consensus MFE | -17.51 |
| Energy contribution | -16.68 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.35 |
| Mean z-score | -3.84 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10740628 92 + 22407834 UACUUUAUGCUGCUCAUUUUACAUCCC-AAGGGAUAUACCCUUA---CCCAAGUUGGAGCCACAACGACUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((..............-(((((.....))))).---....((((((((.(.....).)))))))).......)).)))))..... ( -22.80) >DroSec_CAF1 9980 92 + 1 UACUUUAUGCUGCUCAUUUUACAUCCC-AAGGGAUAUACCCUUA---CCCAAGUUGGAGCCACAACGACUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((..............-(((((.....))))).---....((((((((.(.....).)))))))).......)).)))))..... ( -22.80) >DroSim_CAF1 10035 92 + 1 UACUUUAUGCUGCUCAUUUUACAUCCC-AAGGGAUAUACCCUUA---CCCAAGUUGGAGCCACAACGACUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((..............-(((((.....))))).---....((((((((.(.....).)))))))).......)).)))))..... ( -22.80) >DroEre_CAF1 9840 92 + 1 UACUUUACGCUGCUCAUUUUACAUCCC-AAGGGAUACACCCCUA---UCCAAGUUGGAACUACAACGAUUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((..............-.((((......)))).---....(((((((((......).)))))))).......)).)))))..... ( -22.00) >DroYak_CAF1 9983 95 + 1 UACUUUAUGCUGCUCAUUUUACAUCCC-AAGGGAUAUACCCUUACCACCCAAGUUGGGUCGCCAACGACUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((..............-(((((.....)))))........((((((((((....)))).)))))).......)).)))))..... ( -24.80) >DroAna_CAF1 8797 91 + 1 -ACAUUACACUGCUCACUUUAGGUCCCCAUUGGACAUUCCCCUA--ACCCGUAUUGGAAACCAACUUGUUUCUACAAUUCCA-AUUGCGUAU-UCC -.....................((((.....)))).........--...((((((((((......((((....)))))))))-).))))...-... ( -13.50) >consensus UACUUUAUGCUGCUCAUUUUACAUCCC_AAGGGAUAUACCCUUA___CCCAAGUUGGAGCCACAACGACUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((.........((((.....))))................(((((((((......).)))))))).......)).)))))..... (-17.51 = -16.68 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:42 2006