Locus 3684

Sequence ID 2L_DroMel_CAF1
Location 10,728,327 – 10,728,431
Length 104
Max. P 0.561836
window5812

overview

Window 2

Location 10,728,327 – 10,728,431
Length 104
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 80.50
Mean single sequence MFE -28.40
Consensus MFE -18.89
Energy contribution -19.58
Covariance contribution 0.70
Combinations/Pair 1.23
Mean z-score -1.36
Structure conservation index 0.66
SVM decision value 0.06
SVM RNA-class probability 0.561836
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10728327 104 + 22407834
----A----UAAAUGUGCUCUCUAUCAAACAGGAAAAUCGCGAUGUUCGCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACAUUUAAACACAAUAAGUUCAUGGGAGUA
----.----......(((((((.....(((.........((((((((((.......)))))))).))....((((....))))................)))...))))))) ( -22.90)
>DroVir_CAF1 2340 101 + 1
UCAUU----UGG-------GUUUAUCCAACAGGACGCUAUCGAUGCUCACAUUUUCUGAGCAUAUGCUACCUGGCCACGGCCACCAUGAAGCACACCAAGUUCAUGGGCGUU
....(----(((-------(....)))))...(((((.....(((((((.......)))))))........((((....))))(((((((.(.......))))))))))))) ( -30.10)
>DroSec_CAF1 2041 108 + 1
UCUUA----UAAAUGUGCUCUCUAUCAAACAGGGAAAUCGCGAUGUUCGCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACAUUUAAGCACAAGAAGUUCAUGGGAGUG
.....----.......((((((.................(((.....)))(((((((((((....)))...((((....))))..........))))))))....)))))). ( -28.00)
>DroSim_CAF1 762 108 + 1
UGUUA----UAAAUGUGCUCUCUAUCCAACAGGGAAAUCGCGAUGUUCCCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACAUUUAAGCACAAGAAGUUCAUGGGAGUA
.....----......(((((((.........(((((.........)))))(((((((((((....)))...((((....))))..........))))))))....))))))) ( -29.70)
>DroEre_CAF1 2199 112 + 1
CAUUAAAACUGAAUCCUCUCUGUGUCCAACAGGAAAAUCUCGGUGCUCGCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACGUUCAAGCACAAGAAGUUCAUGGGAGUG
.......(((((((..((.((((.....))))))..)).)))))((((.(((((((((.((...((..((.((((....)))).)).)).)).))))))))....).)))). ( -31.10)
>DroYak_CAF1 1492 112 + 1
UAUUAAAUUUGAAUGUGCUCUCUAUUCAACAGGGAAAUCGCGGUGCUCGCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACGUUCAAGCACAAGAAGUUCAUGGGAGUA
...............(((((((.................(((.....)))((((((((.((...((..((.((((....)))).)).)).)).))))))))....))))))) ( -28.60)
>consensus
UAUUA____UAAAUGUGCUCUCUAUCCAACAGGAAAAUCGCGAUGCUCGCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACAUUUAAGCACAAGAAGUUCAUGGGAGUA
...............(((((((.....(((...........((((((((.......))))))))((((...((((....))))......))))......)))...))))))) (-18.89 = -19.58 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:37 2006