| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,720,676 – 10,720,777 |
| Length | 101 |
| Max. P | 0.564575 |
| Location | 10,720,676 – 10,720,777 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 75.92 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -22.49 |
| Energy contribution | -22.93 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10720676 101 - 22407834 CAUCGCCAUCUCCACCCCCCCACAGAAUUCCAUCUCCAUUCCCACUGGAGCUGCCAAGUGAGGCGUUAAGCAGCGGCUAUGCAGUCAACAUUGGCAGACUG ......................(((........(((((.......)))))(((((((.(((.((((..(((....)))))))..)))...))))))).))) ( -26.40) >DroSim_CAF1 52706 92 - 1 -----CCAUCUCCUG---CCCCG-AAAUCCCAUCACCAUUCCCGCUGGAGCUGCCAAGUGAGGCGUUAAGCGGCGGCCAUGCCGUCAACAUUGGCAGACUG -----....((((.(---(...(-((............)))..)).))))(((((((((...((.....))((((((...)))))).)).))))))).... ( -28.60) >DroEre_CAF1 53271 83 - 1 CGUCACU------------------AUUCCCAUCUCCAUUCCCGCUGGAGUUGCCAAGUGAGGCGUUAAGCGGCGGCGAUGCCGUCAACAUUGGCAGACUG .(((...------------------........(((((.......))))).((((((.(((((((((..((....)))))))).)))...))))))))).. ( -28.50) >consensus C_UC_CCAUCUCC_____CCC____AAUCCCAUCUCCAUUCCCGCUGGAGCUGCCAAGUGAGGCGUUAAGCGGCGGCCAUGCCGUCAACAUUGGCAGACUG .................................(((((.......)))))(((((((.((((((((...((....)).))))).)))...))))))).... (-22.49 = -22.93 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:35 2006