Locus 3674

Sequence ID 2L_DroMel_CAF1
Location 10,690,856 – 10,690,948
Length 92
Max. P 0.758633
window5799

overview

Window 9

Location 10,690,856 – 10,690,948
Length 92
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 82.25
Mean single sequence MFE -29.72
Consensus MFE -21.20
Energy contribution -21.15
Covariance contribution -0.05
Combinations/Pair 1.30
Mean z-score -2.00
Structure conservation index 0.71
SVM decision value 0.50
SVM RNA-class probability 0.758633
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10690856 92 + 22407834
CGA--------AACCCGUUUGGGUGUCGUCACAGCCAACUUUGAGAUACA-------UUUGUGAUCGUACACAUGU--GUGACGAUUAGCGACUCACAUCCGAAGGGGU
...--------.((((.(((((((((.(((.(((......))).......-------....(((((((.(((....--))))))))))..)))..))))))))).)))) ( -32.10)
>DroSec_CAF1 22390 92 + 1
CGA--------AACCCGUUUGGGUGUCGUCACAGCCAACUUUGAGAUACA-------UCUUUGAUCGUACACAUGU--GUGACGAUUAGAGACUCACAUCCGAAGGGGU
...--------.((((.((((((((((.(((.((....)).)))))))).-------(((((((((((.(((....--)))))))))))))).......))))).)))) ( -36.90)
>DroSim_CAF1 23151 92 + 1
CGA--------AACCCGUUUGGGUGUCGUCACAGCAAACUUUGAGAUACA-------UCUGUGAUCGUACACAUGU--GUGACGAUUAGCGACUCACAUCCGAAGGGGU
...--------.((((.(((((((((.(((.(...........(((....-------))).(((((((.(((....--))))))))))).)))..))))))))).)))) ( -33.10)
>DroEre_CAF1 23130 92 + 1
CGA--------AACCCGUUUGGGUGUCGUUACAGCCAACUCUGAGAUACA-------GCUGCGAUCGAAAAUAUGU--GUGACGAUUAGCGACUCACAUCCAAAGGGGU
...--------.((((.(((((((((.(((.(((......))).......-------(((..(((((...((....--))..)))))))))))..))))))))).)))) ( -26.80)
>DroYak_CAF1 22003 92 + 1
CGA--------AACCGGUUUGGGUGUCGUCACAGCUAACUUUGAGAUACA-------GCUGUGAUCGAAAACAUGU--GUGACGAUUAGCGAUUCACAUCCAAAGGGGU
...--------.(((..(((((((.(((((((((((.............)-------))))))).)))........--((((((.....))..)))))))))))..))) ( -27.02)
>DroAna_CAF1 21868 109 + 1
UAAAGUGGGAUAACCAGUUUCAGUGUCGUCAUAGCAAUCUUUGAACUCCCUAUUCUAGAUAAUAUCGGAAGCAUGUGAGUGACGAUUAGCGACUCAUAUCCAAAGGGGU
.......(((((...((((.(...((((((((.(((((((..(((.......))).)))).....(....)..)))..))))))))..).))))..)))))........ ( -22.40)
>consensus
CGA________AACCCGUUUGGGUGUCGUCACAGCCAACUUUGAGAUACA_______GCUGUGAUCGUAAACAUGU__GUGACGAUUAGCGACUCACAUCCAAAGGGGU
............((((.(((((((((.(((.(((......)))..................((((((...((......))..))))))..)))..))))))))).)))) (-21.20 = -21.15 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:24 2006