| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,686,849 – 10,686,958 |
| Length | 109 |
| Max. P | 0.665809 |
| Location | 10,686,849 – 10,686,958 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 79.60 |
| Mean single sequence MFE | -39.18 |
| Consensus MFE | -23.07 |
| Energy contribution | -23.57 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10686849 109 + 22407834 UUGGCAUUAGCAUUCGCGUUGGCGUUGGCGUUUCCG---CCGAAUUGAGGCAGGGCCGAUGCCACAGCCACCAGAACAGAGAGCGCGAUGAAAAGUUUCAUGU-UGAGUUGUU ..(((.((((((.((((((((((..(((((((((((---((.......))).)))..)))))))..))))............))))))((((....)))))))-))))))... ( -35.40) >DroVir_CAF1 23222 101 + 1 UUGGCAUUGGCAUUGGCAUUGGCGUUGGCGUUG------CCAAAUUGAGGCGAGGCUGAUGCCAAGGCUAUCAGCACGGAGAGAGCGAUAAACAGUUUCAUGA-UGAG----- .(((.((((((..((((.(((((((..((.(((------((.......))))).))..))))))).))))...)).((.......)).....)))).)))...-....----- ( -36.60) >DroPse_CAF1 23465 113 + 1 UGGGCGUUAGCGUUGGCGUUGGCGUUGGCAUUGCCACCGCCGAACUGUGGCAAGGCCGAGGCCACAGCCACCAAAACGGAGAGCGCGAUAAACAGUUUCAUGACUACGCUUGU .((((((..((((((((..((((.(((((.(((((((.(.....).))))))).))))).))))..))).((.....))..))))).......((((....)))))))))).. ( -49.00) >DroEre_CAF1 19394 109 + 1 UUCGCGUUGGCGUUGGCAUUGGCGUUGGCGCUUCCA---CCAAAUUGGGGCAGGGCCGAUGCCACAGCCACCAGAACAGAGAGCGCGAUGAAUAGUUUCAUGU-UGAGUUGUU .(((((((..(((((((..((((((((((.((.((.---((.....)))).)).))))))))))..)))).....)).)..)))))))((((....))))...-......... ( -43.50) >DroYak_CAF1 18255 112 + 1 UUCGCAUUGGCAUUUGCGUUGGCGUUGGCGUUACCAUUUCCAAAUUGAGGCAGGGCCGAUGCCACAGCCACGAGAACAGAGAGCGCGAUGAAUAAUUUCAUGU-UGAGUUGUU ((((...((((...((...((((((((((.((.((.((........)))).)).))))))))))))))))))))(((((.....((.(((((....)))))))-....))))) ( -30.40) >DroAna_CAF1 18251 109 + 1 UUAGCAUUGGCAUUGGCAUUAGCAUUGGCAUUGCCA---CCAAACUGUGGCAGAGCCGAUGCCACCGCCACCAGAACGGAGACCGCGAUGAAUAGUUUCAUUU-UGAGUUGUU ...((.((((...((((....((((((((.((((((---(......))))))).))))))))....))))))))...(....).))((((((....)))))).-......... ( -40.20) >consensus UUGGCAUUGGCAUUGGCAUUGGCGUUGGCGUUGCCA___CCAAAUUGAGGCAGGGCCGAUGCCACAGCCACCAGAACAGAGAGCGCGAUGAAUAGUUUCAUGU_UGAGUUGUU ...((....))..((((..((((((((((.((.((.............)).)).))))))))))..)))).................(((((....)))))............ (-23.07 = -23.57 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:23 2006