Locus 3671

Sequence ID 2L_DroMel_CAF1
Location 10,677,985 – 10,678,088
Length 103
Max. P 0.569253
window5796

overview

Window 6

Location 10,677,985 – 10,678,088
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 73.96
Mean single sequence MFE -35.45
Consensus MFE -15.23
Energy contribution -16.16
Covariance contribution 0.92
Combinations/Pair 1.33
Mean z-score -1.86
Structure conservation index 0.43
SVM decision value 0.07
SVM RNA-class probability 0.569253
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10677985 103 + 22407834
UCGCCGGAGUAUGAAGCCACCGAGGACGUGGACUCCUCCACCUAUAUGUCCGUGGAGGAGAGCACCAUUACGGUAGAUGUCGACUCGGACGUGAUAUUGACCA
(((((.((((.(((..(.((((.....(((..(((((((((..........)))))))))..))).....)))).)...))))))).)..))))......... ( -34.00)
>DroPse_CAF1 8725 94 + 1
CCUCCGC---------CCAAAGAAGAGGAGGAGUCCUCCUCGCUGUCACCCAUUGAGUCUGGAACCUUUACGAUGGAUAUUGACACGGAACUCAUCCUAACCA
..((((.---------........(((((((...)))))))..(((((.((((((.....(....)....))))))....))))))))).............. ( -25.80)
>DroSec_CAF1 9280 103 + 1
UCGCCGGAGUAUGAAGCCACCGAGGAGGUGGACUCCUCCACCUAUAUGUCCGUGGAGGAGGGCACCAUUACGGUGGACGUCGACUCGGAUGUGAUAUUGACCA
(((((.((((.(((..((((((..(.((((..(((((((((..........)))))))))..)))).)..))))))...))))))).)..))))......... ( -46.90)
>DroSim_CAF1 9539 103 + 1
UCGCCGGAGUAUGAAGUCACCGAGGAGGUGGACUCCUCCACCUAUAUGUCCGUGGAGGAGGGCACCAUUACGGUGGACGUCGACUCGGAUGUGAUAUUGACCA
(((((.((((.(((..((((((..(.((((..(((((((((..........)))))))))..)))).)..))))))...))))))).)..))))......... ( -44.40)
>DroYak_CAF1 9914 103 + 1
UCGCCGGACUAUGAAGCCACAGCGGAGGUGGACUCCUCCACCUACAUGUCCGUUGAGGAGGGCACCAUCACGGUGGACGUCGACUCAGAUGUGAUCUUGACCA
((((((....(((..(((.(((((((((((((....))))))......))))))).....)))..)))..))))))(((((......)))))........... ( -35.80)
>DroPer_CAF1 8707 94 + 1
CCUCCGC---------CCAAAGAAGAGGAGGAGUCCUCCUCGCUGUCACCCAUUGAGUCUGGAACCUUUACGAUGGAUAUUGACACGGAACUCAUCCUAACCA
..((((.---------........(((((((...)))))))..(((((.((((((.....(....)....))))))....))))))))).............. ( -25.80)
>consensus
UCGCCGGAGUAUGAAGCCACAGAGGAGGUGGACUCCUCCACCUAUAUGUCCGUGGAGGAGGGCACCAUUACGGUGGACGUCGACUCGGAUGUGAUAUUGACCA
((((((..........((.....)).(((((.((((((................))))))....))))).))))))(((((......)))))........... (-15.23 = -16.16 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:21 2006