Locus 3666

Sequence ID 2L_DroMel_CAF1
Location 10,663,027 – 10,663,121
Length 94
Max. P 0.868221
window5786

overview

Window 6

Location 10,663,027 – 10,663,121
Length 94
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 82.42
Mean single sequence MFE -22.00
Consensus MFE -14.36
Energy contribution -16.28
Covariance contribution 1.92
Combinations/Pair 1.09
Mean z-score -2.20
Structure conservation index 0.65
SVM decision value 0.86
SVM RNA-class probability 0.868221
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10663027 94 + 22407834
GCUUGAGUUGCCUCUUGCAUUGACAUUGGUUUUCCACGGCAACUUUGUGUUGUUUCUAUAAUACCGCUGUAUAGAUU-UUCUAUACGGCAUUAUC
....((((((((((.......))...(((....))).)))))))).(((((((....))))))).(((((((((...-..)))))))))...... ( -29.40)
>DroSec_CAF1 16200 94 + 1
GCUUCAGUUCCCUCUUGCAUUGACAUUGGUUUUCCACGGCGACUUUGUGUUGUUUCUAUAACACGGAUGUAUAGAUU-UUCUAUACGGCAUUAUC
(((...(((.((((.......))...(((....))).)).)))((((((((((....)))))))))).((((((...-..)))))))))...... ( -20.80)
>DroSim_CAF1 16158 94 + 1
GCUUGAGUUCCCUCUUGCAUUGACAUUGGUUUUCCACGGCGACUUUGUGUUGUUUCUAUAACACCGCUGUAUAGAUU-UUCUAUACGGCAUUAUC
((..(((....)))..)).(((.(..(((....)))..))))....(((((((....))))))).(((((((((...-..)))))))))...... ( -26.80)
>DroEre_CAF1 18664 79 + 1
GCUUGAGCUCCUCCUUGCAUUGACAUUG--------------UUUUCUGUUGUAUCUAUAACACCGCUGUAUAGAG--UUCUCUACGGCAUUAUU
((..(((...)))...))..........--------------.....((((((....))))))..((((((.((..--..)).))))))...... ( -14.20)
>DroYak_CAF1 17197 94 + 1
GCUUGAGUUCC-CAUUGCAUUGACAUUGGAUUUCCACGGCGAUUUUGUGUUGUGCCUAUAACACCACAGAAUAGAUUCUUCUAUACAGCAAUAUU
...........-.(((((((((.(..(((....)))..)))))((((((.(((.......))).))))))(((((....)))))...)))))... ( -18.80)
>consensus
GCUUGAGUUCCCUCUUGCAUUGACAUUGGUUUUCCACGGCGACUUUGUGUUGUUUCUAUAACACCGCUGUAUAGAUU_UUCUAUACGGCAUUAUC
((..(((....)))..))............................(((((((....))))))).((((((((((....))))))))))...... (-14.36 = -16.28 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:12 2006