Locus 3665

Sequence ID	2L_DroMel_CAF1
Location	10,657,167 – 10,657,269
Length	102
Max. P	0.992143

overview

Window 5

Location	10,657,167 – 10,657,269
Length	102
Sequences	4
Columns	113
Reading direction	reverse
Mean pairwise identity	73.60
Mean single sequence MFE	-17.90
Consensus MFE	-9.81
Energy contribution	-10.32
Covariance contribution	0.50
Combinations/Pair	1.14
Mean z-score	-2.49
Structure conservation index	0.55
SVM decision value	2.31
SVM RNA-class probability	0.992143
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10657167 102 - 22407834
A------AACAGACAUUUGGCAACCCAAAAUGCCUCUGCCAAAUGAGCAAAAAACACU--GAUUAUUUGCCAUCUAAAGGAUAAGUAGUCAAAUUUUGAUAAAAAAAAAA---
.------..(((((((((((((..............)))))))))............(--(((((((((((.......)).))))))))))...))))............--- ( -22.04)
>DroSec_CAF1 10377 102 - 1
A------AACAGACAUUUGGCAACCGAAAAAGACUCUGCCAAAUGAGCAUAAGAAAC-----UUAUUUGCCAGGUAAAGGAUAAGUAGUUCAAUUUUGAUAAAAAAAAAACCA
.------..(((((((((((((..............))))))))).......(((((-----((((((..........))))))))..)))...))))............... ( -17.44)
>DroSim_CAF1 10274 86 - 1
A------AACAGACAUUUGGCAAC---------------CAAAUGAGCAUAAGAAACU--GCUUAUUUGCCAGCUAAAGGAUAAGUAGUUCAAUUUUGAUAAAAAAAAA----
.------..((((..((((((...---------------((((((((((........)--)))))))))...))))))((((.....))))...))))...........---- ( -18.70)
>DroEre_CAF1 12649 105 - 1
-GAAAUAAAUAAACUUUUGCAAUCCAAAAAGGCCUAUACCAAAAGCGCAUUAGACACUUUGCAUAUUUGCCAGCUAAAGGAUAAGUAGUCCAAUUUUGAUAAAAAA-------
-.......................(((((.(((..(((...((((.((....).).))))...)))..))).......((((.....))))..)))))........------- ( -13.40)
>consensus
A______AACAGACAUUUGGCAACC_AAAA_GCCUCUGCCAAAUGAGCAUAAGAAACU__GCUUAUUUGCCAGCUAAAGGAUAAGUAGUCCAAUUUUGAUAAAAAAAAA____
.........(((((((((((((..............)))))))))..................((((((((.......)).)))))).......))))............... ( -9.81 = -10.32 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:11 2006