| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,635,840 – 10,635,954 |
| Length | 114 |
| Max. P | 0.822676 |
| Location | 10,635,840 – 10,635,954 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.79 |
| Mean single sequence MFE | -26.50 |
| Consensus MFE | -14.95 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.822676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10635840 114 + 22407834 CAGCCC--CAAACCGACCGCCCACAUCUCCGGGUUUUCCAUAUUCUCCCUUACU---UCCCGACAAAUGUGCUAAGUAUACGUUGGCCAGAGAGAUAAACAUGGCCAACACACAUAGGC- ..(((.--......((..((((........))))..))................---.........(((((....(....)((((((((............)))))))).))))).)))- ( -25.50) >DroSec_CAF1 15901 114 + 1 CAGCCC--CAAACCGACCGCCCACAUCCCCGGGUUUUCCAUAUUCUCCUGUACU---UCCCGGCAAAUGUGCUAAGUAUACGUUGGCCAGAGAGAUAAACAUGGCCAACACACAUAGGC- ..(((.--......((..((((........))))..))..........((((((---(...((((....))))))))))).((((((((............)))))))).......)))- ( -29.70) >DroSim_CAF1 16470 114 + 1 CAGCCC--CAAACCGACCGCCCACAUCCCCGGGUUUUCCAUAUUCUCCCGUACU---UCCCGGCAAAUGUGCUAAGUAUACGUUGGCCAGAGAGAUAAACAUGGCCAACACACAUAGGC- ..(((.--......((..((((........))))..))...........(((((---(...((((....))))))))))..((((((((............)))))))).......)))- ( -29.10) >DroEre_CAF1 16274 89 + 1 ----------CGCCCACCGCCCACAUCC-----------------UCCCGCAGU---CCCCGACAAAUGUGCUAAGUGUACGUUGGCCAGAGAGAUAAACAUGGCCAACACACACGCGC- ----------.......(((........-----------------...((((((---(...)))...))))....((((..((((((((............))))))))..))))))).- ( -22.60) >DroYak_CAF1 16164 96 + 1 CAGCUC--CCAGUCCACCGCCCACAUAC------------------CCCGGACU---ACCCAACAAAUGUGCUAAGUAUACGUUGGCCAGAGAGAUAAACAUGGCCAACACACACACGU- .(((..--..(((((.............------------------...)))))---.....((....)))))........((((((((............))))))))..........- ( -20.19) >DroAna_CAF1 18860 101 + 1 CACCCGGCUGGACCCGCCUCAC-CAGCCCCG-----------------CGAACAAACCACCGGC-AAUGUGCUAAGUAUACGUUGGCCAGGGAGAUAAACAUGGCCAACACACACGCAGA .....((((((..........)-)))))..(-----------------((...........(((-.....)))........((((((((.(........).)))))))).....)))... ( -31.90) >consensus CAGCCC__CAAACCCACCGCCCACAUCCCCG______________UCCCGUACU___UCCCGACAAAUGUGCUAAGUAUACGUUGGCCAGAGAGAUAAACAUGGCCAACACACACACGC_ ...................................................................((((....(....)((((((((............)))))))).))))...... (-14.95 = -14.95 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:05 2006