Locus 366

Sequence ID	2L_DroMel_CAF1
Location	1,157,361 – 1,157,451
Length	90
Max. P	0.988040

overview

Window 8

Location	1,157,361 – 1,157,451
Length	90
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	84.11
Mean single sequence MFE	-23.93
Consensus MFE	-19.28
Energy contribution	-19.64
Covariance contribution	0.36
Combinations/Pair	1.05
Mean z-score	-2.59
Structure conservation index	0.81
SVM decision value	2.10
SVM RNA-class probability	0.988040
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1157361 90 - 22407834
GAUUUCGGUGGAAGAAAAUAACACCUCGCCUUAUAAGGUGGGCGAUUUUUCUUCUACCAUUACGAACACCCCC--CACCCC-UGGUAAUUCGA
......((((((((((((...(.((.(((((....))))))).)..))))))))))))....((((.(((...--......-.)))..)))). ( -29.30)
>DroSec_CAF1 50866 89 - 1
GAUUUCGGUGGAAGAAAAUAACACCUCGCCUUAUAAGGUGGGCGAUUUUCCUUCUACCAUUACGGA---CCCCCCUCCCCC-UGGUAAUACGA
......(((((((((((((.....(((((((....)))))))..))))).))))))))((((((((---......)))...-..))))).... ( -25.20)
>DroSim_CAF1 45916 93 - 1
GAUUUCGGUGGAAGAAAAUAACACCUCGCCUUAUAAGGUGGGCGAUUUUCCUUCUACCAUUACCGAAACCCCCCCUCCCCCUUGGUAAUUCGA
......(((((((((((((.....(((((((....)))))))..))))).))))))))((((((((...............)))))))).... ( -27.66)
>DroEre_CAF1 44590 82 - 1
UUUUUCGGUGGAAAAAAAUAAGACCUCGCCUUAUAAGGUGGGCGAUUUUCCUUUUACCAUUUU-----CCCC-----CCAC-CGGUAACUCGA
....(((((((...............(((((....)))))((..(........)..)).....-----....-----))))-)))........ ( -18.70)
>DroYak_CAF1 45791 80 - 1
GAUUUCGGUGGAAA-AAAUAACACCUCGCCUUAUAAGGUGGGCGAUUUUCCUUUUACCAUU-U-----CCCC-----CCAC-CGGUAACUCGA
((..(((((((...-...........(((((....)))))((..(........)..))...-.-----....-----))))-)))....)).. ( -18.80)
>consensus
GAUUUCGGUGGAAGAAAAUAACACCUCGCCUUAUAAGGUGGGCGAUUUUCCUUCUACCAUUAC__A__CCCCC____CCCC_UGGUAAUUCGA
......(((((((((((((.....(((((((....)))))))..))))).))))))))................................... (-19.28 = -19.64 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:04 2006