Locus 3659

Sequence ID 2L_DroMel_CAF1
Location 10,624,564 – 10,624,656
Length 92
Max. P 0.525196
window5773

overview

Window 3

Location 10,624,564 – 10,624,656
Length 92
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 84.06
Mean single sequence MFE -27.91
Consensus MFE -18.08
Energy contribution -18.22
Covariance contribution 0.14
Combinations/Pair 1.14
Mean z-score -2.37
Structure conservation index 0.65
SVM decision value -0.02
SVM RNA-class probability 0.525196
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10624564 92 - 22407834
GAGUGCUUUAUUAAAUUUCCUUUUUUAUUGUUGUGGCCGCAUUAAGUGGCCAAGGCUAGUCCGGAAUCAGCUGGGACCGGCUAUACAUCUAU---
..(((........................((..(((((((.....)))))))..))(((.((((..((....))..))))))))))......--- ( -24.90)
>DroPse_CAF1 5274 80 - 1
GAGUACUUUAUUAAAUUUCCUU-UUUAUUGUUGUGGCCGCAUUAAGUGGCCGAGGCUGGUCCCGGAUCAGCUGGGACCCGC--------------
......................-......((..(((((((.....)))))))..)).((((((((.....))))))))...-------------- ( -28.90)
>DroEre_CAF1 5113 95 - 1
GAGUGCUUUAUUAAAUUUCCUUUUUUAUUGUUGUGGCCGCAUUAAGUGGCCAAGGCUAGUCCGGAAUCAGCUGGGACCAGCUAUGCAUCUAUAUG
..((((..........((((.........((..(((((((.....)))))))..))......))))..(((((....)))))..))))....... ( -27.96)
>DroYak_CAF1 4834 92 - 1
GAGUGCUUUAUUAAAUUUCCUUUAUUAUUGUUGUGGCCGCAUUAAGUGGCCAAGGCUAGUCCGGAAUCAGCUGGGACCAGCUACACAUCUAU---
..(((...........((((...((((..((..(((((((.....)))))))..))))))..))))..(((((....))))).)))......--- ( -27.80)
>DroAna_CAF1 4846 80 - 1
GAGUGCUUUAUUAAAUUUCCGUUUUUAUUGUUGUGGCCGCAUUAAGUGGCCAAGGCUAGCCGGGAAUCAUCUGGGAGCAC---------------
..(((((((.....(((((((.((.....((..(((((((.....)))))))..)).)).)))))))......)))))))--------------- ( -29.00)
>DroPer_CAF1 5461 80 - 1
GAGUACUUUAUUAAAUUUCCUU-UUUAUUGUUGUGGCCGCAUUAAGUGGCCGAGGCUGGUCCCGGAUCAGCUGGGACCCGC--------------
......................-......((..(((((((.....)))))))..)).((((((((.....))))))))...-------------- ( -28.90)
>consensus
GAGUGCUUUAUUAAAUUUCCUUUUUUAUUGUUGUGGCCGCAUUAAGUGGCCAAGGCUAGUCCGGAAUCAGCUGGGACCAGC______________
.............................((..(((((((.....)))))))..))...(((((......))))).................... (-18.08 = -18.22 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:00 2006