Locus 3656

Sequence ID 2L_DroMel_CAF1
Location 10,620,010 – 10,620,108
Length 98
Max. P 0.764296
window5768

overview

Window 8

Location 10,620,010 – 10,620,108
Length 98
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.93
Mean single sequence MFE -29.78
Consensus MFE -21.01
Energy contribution -21.10
Covariance contribution 0.09
Combinations/Pair 1.30
Mean z-score -1.40
Structure conservation index 0.71
SVM decision value 0.51
SVM RNA-class probability 0.764296
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10620010 98 + 22407834
UCGGCUA-AAUCUCCGUAUCUCAUCCGUAAUCAGGAAUCCUGUAUGGAGUUCGAGCGCCUCGUCCACGCUCAGUGUGAGGCCCUCAUUCAGGCCAUCCA
..((((.-...((((((((....(((.......))).....))))))))...(((.((((((..(((.....))))))))).))).....))))..... ( -34.60)
>DroPse_CAF1 132 92 + 1
CCGUUCU-CAGCUCCGGUU------UUUAAUCAGGAAUCCUGCAUGGAAUUCGAGCGUCUGGUGCACGCCCAGUGCGAGGCCCUCAUCCAGGCCAUCCA
.......-..((((..(((------((....((((...))))...)))))..))))((((((.((((.....))))(((...)))..))))))...... ( -28.10)
>DroEre_CAF1 131 95 + 1
UCGGCUA-AAUCU--GUAUCUCCUCCGUA-UCAGGAAUCCUGCAUGGAGUUCGAGCGCCUCGUCCACGCCCAGUGCGAGGCCCUAAUUCAGGCCAUCCA
..((((.-.....--.......((((((.-.((((...)))).))))))....((.((((((..(((.....))))))))).))......))))..... ( -30.90)
>DroYak_CAF1 135 95 + 1
UCGGCUA-AAUCU--GUAUCUCAUCCGUA-UCAGGAAUCCUGCAUGGAGUUCGAGCGCCUUGUCCACGCCCAGUGUGAGGCACUCAUUCAGGCCAUCCA
..((((.-.....--........(((((.-.((((...)))).)))))....(((.(((((...(((.....))).))))).))).....))))..... ( -29.10)
>DroAna_CAF1 142 97 + 1
CCGGCUUACAUUU--UUGAGUUAUCUAUGCACAGGAAUCCUGCAUGGAGUUCGAGCGACUUGUGCACGCCCAGUGCGAGGCUUUGAUUCAGGCCAUUCA
..((((.......--.(((((((((((((((..((...))))))))))....((((..((((..(.......)..)))))))))))))))))))..... ( -27.90)
>DroPer_CAF1 132 92 + 1
CCGUUCU-CAGCUCCGGUU------UUUAAUCAGGAAUCCUGCAUGGAAUUCGAGCGUCUGGUGCACGCCCAGUGCGAGGCCCUCAUCCAGGCCAUCCA
.......-..((((..(((------((....((((...))))...)))))..))))((((((.((((.....))))(((...)))..))))))...... ( -28.10)
>consensus
CCGGCUA_AAUCU__GUAUCUCAUCCGUAAUCAGGAAUCCUGCAUGGAGUUCGAGCGCCUCGUCCACGCCCAGUGCGAGGCCCUCAUUCAGGCCAUCCA
..((((...........................(((.(((.....))).)))(((.((((((..(.......)..)))))).))).....))))..... (-21.01 = -21.10 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:55 2006