Locus 3651

Sequence ID 2L_DroMel_CAF1
Location 10,614,428 – 10,614,534
Length 106
Max. P 0.650921
window5761

overview

Window 1

Location 10,614,428 – 10,614,534
Length 106
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 83.57
Mean single sequence MFE -34.12
Consensus MFE -26.87
Energy contribution -26.77
Covariance contribution -0.11
Combinations/Pair 1.21
Mean z-score -1.73
Structure conservation index 0.79
SVM decision value 0.24
SVM RNA-class probability 0.650921
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10614428 106 + 22407834
GCGAAAGUC------------UGAAAUUGACUUUGGGUCAUCUGAAAGUCGGAAAAGGGCUUAGGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGUCGCU
(((((.(((------------((((.((((.((((((((.((((.....))))....)))))))).))))..))).)))).)))))..............((.((((....)))))). ( -30.80)
>DroPse_CAF1 94532 94 + 1
GC-----AC------------UGGAAUUGACUUUGGGUCAGCUGAAAGUCAAUGUCGGGCUUGGGUCUGA-------GGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGCCACU
((-----((------------((..(((((((((.((....)).)))))))))(((((((....))))..-------.(((((..(((....)))..))))).))).)).)))).... ( -31.30)
>DroSec_CAF1 94019 106 + 1
GUGAAUGUC------------UGAAAUUGACUUUGGGUCAUCUGAAAGUCGGCAGAGGGCUUAAGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGUCGCU
..(((((((------------((((.((((.((((((((.((((........)))).)))))))).))))..))).))))))))................((.((((....)))))). ( -33.40)
>DroSim_CAF1 94439 106 + 1
GCGAAUGUC------------UGAAAUUGACUUUGGGUCAUCUGAAAGUCGAAAGAGGGCUUAAGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGUAGACACGUGUGUCGCU
(((((((((------------((((.((((.((((((((.(((..........))).)))))))).))))..))).)))))))))).................((((....))))... ( -32.30)
>DroEre_CAF1 94707 118 + 1
GCGAAUGUCUGGCAGUCAGUCUGAAAUUGACUUUGGGUCAGCCGAAAGUCGGAAGAGGGCUUAGGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGUCGCU
((((((.((..((....(((((....((((((((.((....)).))))))))....)))))...))..)).))))...(((((..(((....)))..))))).((((....)))))). ( -39.70)
>DroYak_CAF1 97430 118 + 1
GCGAAUGUCUGGCAGUCAGUAUGAAAUUGACUUUGGGUCAGCCGACAGUCGGAAAAGGGCUUAGGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGUCGCU
((((((.((..(((((((((.....)))))))(((((((..(((.....))).....)))))))))..)).))))...(((((..(((....)))..))))).((((....)))))). ( -37.20)
>consensus
GCGAAUGUC____________UGAAAUUGACUUUGGGUCAGCUGAAAGUCGGAAGAGGGCUUAGGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGUCGCU
((((((.((.................((((((((.((....)).))))))))....((((....)))))).))))...(((((..(((....)))..))))).((((....)))))). (-26.87 = -26.77 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:48 2006