| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,613,238 – 10,613,329 |
| Length | 91 |
| Max. P | 0.525543 |
| Location | 10,613,238 – 10,613,329 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 83.75 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -17.05 |
| Energy contribution | -17.17 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10613238 91 - 22407834 --CUUGUUGUUGUGGUAGUCCUCUGUUAAACAUGUUUGACACGGACUCUCGUGGGAUAAGUCCCCCUAUUCCGUAACCCUCCUGCCGCAUCAU --.....((.((((((((......((((((....))))))(((((.....(.((((....)))))....))))).......)))))))).)). ( -27.20) >DroPse_CAF1 93388 89 - 1 UUGUUGCUGUUGCGGUAGUCCUCUGUUAAACAUGUUUGACACAGACUCCCAUGGGAUA--UCCCCCUCGCUCGGGUCCCUCCAU--ACAAUGU ((((.((....))((.((((...(((((((....)))))))..)))).))..((((..--.(((........))))))).....--))))... ( -22.20) >DroSec_CAF1 92860 91 - 1 --CUUGUUGUUGUGGUAGUCCUUUGUUAAACAUGUUUGACACGGACUCUCGUGGGAUAAGUCCCCCUAUUCCGUAACCCUCCUGCCGCAUCAU --.....((.((((((((......((((((....))))))(((((.....(.((((....)))))....))))).......)))))))).)). ( -27.20) >DroSim_CAF1 93231 91 - 1 --CUUGUUGUUGUGGUAGUCCUCUGUUAAACAUGUUUGACACGGACUCUCGUGGGAUAAGUCCCCCUAUUCCGUAACCCUCCUGCCGCAUCAN --.....((.((((((((......((((((....))))))(((((.....(.((((....)))))....))))).......)))))))).)). ( -26.60) >DroEre_CAF1 93557 92 - 1 CCCUUGUUGUUGUGGUAGUCCUCUGUUAAACAUGUUUGACACGGACUCUCGUGGGAUAAGUCCCCCUAUUCCGUAACCCU-CCGCCGCAUCAU .......((.(((((((((((..(((((((....))))))).))))).....((((((........))))))........-..)))))).)). ( -25.60) >DroPer_CAF1 95293 89 - 1 UUGUUGCUGUUGCGGUAGUCCUCUGUUAAACAUGUUUGACACAGACUCCCAUGGGAUA--UCCCCCUCGCUCGAGUCCCUCCAU--ACAAUGU ..(..(((...((((.((((...(((((((....)))))))..)))).))..(((...--.)))....))...)))..).....--....... ( -20.10) >consensus __CUUGUUGUUGUGGUAGUCCUCUGUUAAACAUGUUUGACACGGACUCUCGUGGGAUAAGUCCCCCUAUUCCGUAACCCUCCUGCCGCAUCAU ....((.(((.((((.(((((..(((((((....))))))).))))).))..((((....))))...................)).))).)). (-17.05 = -17.17 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:42 2006