Locus 3647

Sequence ID 2L_DroMel_CAF1
Location 10,610,604 – 10,610,707
Length 103
Max. P 0.500000
window5753

overview

Window 3

Location 10,610,604 – 10,610,707
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 91.41
Mean single sequence MFE -30.44
Consensus MFE -23.88
Energy contribution -24.88
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.78
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10610604 103 - 22407834
GGAGUUGCAGUUGGGCAAAAAGAGGGCCAAAACAAACAGAAAAGUUGCUACCCAGACGGAAUUGAAGGCCUUAUGUUUCCCAUUGCGGUUGCGUGGGCAACAU
.....((((((.(((.(((...((((((......(((......))).....((....)).......))))))...))))))))))))(((((....))))).. ( -30.10)
>DroSec_CAF1 90202 103 - 1
GGAGUUGCAGUUGGGCAAAAAGAGGGCCAAAACAAACAUGAAAGUUGCAGCCCAGACGGAAUUGAAGGCCUUGUGUUUCCCAUUGCGGUUGCGUGGGCAACAU
.....((((((.(((.(((.(.((((((......(((......))).....((....)).......)))))).).))))))))))))(((((....))))).. ( -30.00)
>DroSim_CAF1 90748 103 - 1
GGAGUUGCAGUUGGGCAAAAAGAGGGCCAAAACAAACAUGAAAGUUGCAGCCCAGACGGAAUUGAAGGCCUUAUGUUUCCCAUUGCGGUUGCGUGGGCAACAU
.....((((((.(((.(((...((((((......(((......))).....((....)).......))))))...))))))))))))(((((....))))).. ( -30.10)
>DroEre_CAF1 91066 97 - 1
--AGUUGCAGUGGGGCAA-A--AGGGCCAAAACAAACAGAAAAGUUGCUGCCCAGACGGCAUUGAAGGCCUUAUGUUUC-CAUUGCGGUUGCGUGGGCAACAU
--...((((((((((((.-.--((((((......(((......)))((((......))))......)))))).)).)))-)))))))(((((....))))).. ( -34.00)
>DroYak_CAF1 93514 98 - 1
--AGUUGGAGUGGUGCAAAA--AGGGCCAAGACACACAGAAAAGUUGCAGCCCAGACGGCAUUGAAGGCCUUAUGUUUC-CAUUGCGGUUGCGUGGGCAACAU
--...((.(((((.(((...--((((((..(((..........)))...(((.....)))......)))))).)))..)-)))).))(((((....))))).. ( -28.00)
>consensus
GGAGUUGCAGUUGGGCAAAAAGAGGGCCAAAACAAACAGAAAAGUUGCAGCCCAGACGGAAUUGAAGGCCUUAUGUUUCCCAUUGCGGUUGCGUGGGCAACAU
.....((((((.(((.(((...((((((......(((......))).....((....)).......))))))...))))))))))))(((((....))))).. (-23.88 = -24.88 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:40 2006