| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,589,439 – 10,589,533 |
| Length | 94 |
| Max. P | 0.618456 |
| Location | 10,589,439 – 10,589,533 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 76.81 |
| Mean single sequence MFE | -38.18 |
| Consensus MFE | -15.65 |
| Energy contribution | -16.23 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10589439 94 + 22407834 UUACUGGGAUCUCUGGCCUAUUGGCACGCAUGACUGGCCAAAGGC----AGUCGUCAGCUGCAGUUAAUGCAUCCGUAG-------GAGC------UG-----GGCACCCACUCCA .(((.(((((..(((.(((.(((((.((......)))))))))))----))..)))...((((.....)))).)))))(-------(((.------((-----(....))))))). ( -32.90) >DroSec_CAF1 76788 100 + 1 UUACUGGGAUCUCUGGCCUAUUGGCACGCAUGACUGGCCAAAGGC----AGUCGUCAGCUGCAGUUAAUGCAUCCGUAG-------GAGCUGUAGCUG-----GUCACCCACUCCA ....((((.......((((.(((((.((......)))))))))))----....(((((((((((((..(((....))).-------.)))))))))))-----).).))))..... ( -40.40) >DroSim_CAF1 77319 100 + 1 UUACUGGGAUCUCUGGCCUAUUGGCACGCAUGACUGGCCAAAGGC----AGUCGUCAGCUGCAGUUAAUGCAUCCGUAG-------GAGCUGUAGCUG-----GGCACCCACUCCA ....((((.......(((....)))..(((((((((.(....).)----))))))(((((((((((..(((....))).-------.)))))))))))-----.)).))))..... ( -42.90) >DroEre_CAF1 77775 100 + 1 UUACUGGGAUCCCUGGCCUGCUGGCACGCAUGACUGGCCAAAGCC----AGUCGUCAGCUGCAUUUAAUGCAUCCGUAG-------GAGCUGUAGCCG-----GGCACCCACUCCC ....((((...((((((.(((..(((.(((((((((((....)))----))))))..))))).......((.(((...)-------)))).)))))))-----))..))))..... ( -40.60) >DroYak_CAF1 79753 112 + 1 UAACUGGGAUCCCCGGCCUGUUGGCACGCAUGACUGGCCAAAGCC----AGUCGUCAGCUGCAGUUAAUGCAUACGUAGCUGCAUAAAGCUGUAGCUCUAUGCAGCACCCACUCCC ....((((.....(((((....)))..(((((((((((....)))----))))))..))((((.....))))..))..((((((((.(((....))).)))))))).))))..... ( -46.60) >DroPer_CAF1 81386 86 + 1 CAUCGGGGCACGCCGGGUCGGAGCCACGCAUGACUUGCCAAAGCCGCUCCGUCGUCAGCUGGAGCUAAUGCAUUCGAGG--------------------------C----ACUCCC ....((((...(((.(((....)))..(((((.(((....))).)((((((.(....).))))))..))))......))--------------------------)----..)))) ( -25.70) >consensus UUACUGGGAUCUCUGGCCUAUUGGCACGCAUGACUGGCCAAAGCC____AGUCGUCAGCUGCAGUUAAUGCAUCCGUAG_______GAGCUGUAGCUG_____GGCACCCACUCCA ....((((.......(((....)))..((.((((.(((............)))))))))((((.....))))...................................))))..... (-15.65 = -16.23 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:22 2006