Locus 3636

Sequence ID 2L_DroMel_CAF1
Location 10,588,844 – 10,588,935
Length 91
Max. P 0.580527
window5733

overview

Window 3

Location 10,588,844 – 10,588,935
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 89.23
Mean single sequence MFE -26.94
Consensus MFE -23.30
Energy contribution -23.34
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.32
Structure conservation index 0.86
SVM decision value 0.09
SVM RNA-class probability 0.580527
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10588844 91 + 22407834
CCCAAUGACCAUGGUUUCCAUAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGACUGAUUUCAUUCAGC
((((((.((.((((...)))).)).).)))))........((((((((...((((.....)))).))))))))...((((......)))). ( -27.10)
>DroSec_CAF1 76238 91 + 1
CCCAAUGUCCAUGGUUUCCACAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGAGUGAUUUCAUUCAGC
((((((..((((.((....)).))))))))))........((((((((...((((.....)))).)))))))).(((((....)))))... ( -29.40)
>DroSim_CAF1 76776 91 + 1
CCCAAUGUCCAUGGUUUCCAUAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGACUGAUUUCAUUCAGC
((((((.(.(((((...)))).).).))))))........((((((((...((((.....)))).))))))))...((((......)))). ( -27.00)
>DroEre_CAF1 77246 86 + 1
CCCAAUGUUCAU-----UCACAGUGGGUUGGGUGCGGCUAGCGAUGUGGAACGAUUUUAAAUCGGUGCAUCGCAGACUGAUUUCAUUCAUC
((((.(((....-----..))).)))).(((((((((((.((((((((...((((.....)))).)))))))))).)))....)))))).. ( -26.30)
>DroYak_CAF1 79188 91 + 1
CCCAAUGUCCAUGCUUUUCACACUGGGUUGGGUUCGGCCAGCGAUGUGGAACGAUUCCAAAUCGGUGCAUCGCAGACUGAUUUCAUUCAUA
((((((..(((((.......)).))))))))).((((.(.((((((((...((((.....)))).)))))))).).))))........... ( -24.90)
>consensus
CCCAAUGUCCAUGGUUUCCACAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGACUGAUUUCAUUCAGC
((((((..((((..........))))))))))........((((((((...((((.....)))).)))))))).((.((....)).))... (-23.30 = -23.34 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:21 2006