Locus 3635

Sequence ID 2L_DroMel_CAF1
Location 10,586,267 – 10,586,378
Length 111
Max. P 0.972363
window5732

overview

Window 2

Location 10,586,267 – 10,586,378
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 88.27
Mean single sequence MFE -38.86
Consensus MFE -33.22
Energy contribution -33.66
Covariance contribution 0.44
Combinations/Pair 1.15
Mean z-score -2.01
Structure conservation index 0.85
SVM decision value 1.69
SVM RNA-class probability 0.972363
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10586267 111 + 22407834
CUAUUCACCAUUCACAGCAUUCACAACUCACUGAGGUUGAAACGCGAGGCUGAGACUGCCAGGAUGAGCUGCAUCCGAGUGUUUUGGCCUCGAGUGAGCAAGUCGAGGCUU
...............(((.(((((..(((((((((((..((((((..(((.......))).(((((.....)))))..))))))..))))).))))))...)).)))))). ( -43.70)
>DroSec_CAF1 73756 104 + 1
CUAUU-------CACAGCAUUCACAACUCACUGAGCUUGAAACGUGAGGCUGAGACGGCCAGGAUGAGCUGCAACCGAGUGUUUUGGCCUCGAGUGAGCAAGUCGAGGCUU
.....-------((.(((((((........((.(((((........))))).)).(((((.....).)))).....))))))).))(((((((.(.....).))))))).. ( -33.10)
>DroSim_CAF1 74250 111 + 1
CUAUUCACCAUUCACAGCAUUCACAACUCACUGAGGUUGAAACGUGAGGCUGAGACGGCCAGGAUGAGCUGCAUCCGAGUGUUUUGGCCUCGAGUGAGCAAGUCGAGGCUU
...............(((.(((((..(((((((((((..(((((...(((((...))))).(((((.....)))))...)))))..))))).))))))...)).)))))). ( -41.30)
>DroEre_CAF1 74672 109 + 1
CCAUUCAGCAUU--CGGCAUUCACAACUCACUGAGGCUGAAACGUGAGGAUGGGACUGCCAGGAUGAGCUGCAUCCGAGUGUUUUGGCCUCGAGUGAGCAACUGGAAGCUG
............--((((.((((...(((((((((((..((((((..(((((.(...(((.....).))).)))))..))))))..))))).))))))....)))).)))) ( -40.70)
>DroYak_CAF1 76614 109 + 1
GCAUUCACCAUU--CAGCAUUCAGAACUCACUGAGGUUGAAACGUGAGGAUGCGACUGCCAGGAUGAGCUGCAUCCAAGUGUUUUGGCCUCGAGUUAGCAACUCAAAGCUG
............--((((..............(((((..((((((..(((((((...(((.....).)))))))))..))))))..)))))((((.....))))...)))) ( -35.50)
>consensus
CUAUUCACCAUUCACAGCAUUCACAACUCACUGAGGUUGAAACGUGAGGCUGAGACUGCCAGGAUGAGCUGCAUCCGAGUGUUUUGGCCUCGAGUGAGCAAGUCGAGGCUU
...............(((.(((((..(((((((((((..((((((..(((.......))).(((((.....)))))..))))))..))))).))))))...)).)))))). (-33.22 = -33.66 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:21 2006