Locus 3632

Sequence ID 2L_DroMel_CAF1
Location 10,583,825 – 10,583,939
Length 114
Max. P 0.881459
window5728

overview

Window 8

Location 10,583,825 – 10,583,939
Length 114
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 87.20
Mean single sequence MFE -34.26
Consensus MFE -25.46
Energy contribution -25.54
Covariance contribution 0.08
Combinations/Pair 1.21
Mean z-score -2.17
Structure conservation index 0.74
SVM decision value 0.92
SVM RNA-class probability 0.881459
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10583825 114 - 22407834
UUUGGAAAGGCUCUAUUGAA-CAGCUUUUCAUGGUAGCCCCGCUUUUCUGGCUGUGUAAAAGCUGUGAAAAGAAAACCCGACAUCUAUUGGGUUGUGGGGUGAAAAUAUGAAAAG
..((((.....)))).....-...(((((((((...(((((((((((((((((.......))))).)))))...(((((((......)))))))))))))).....))))))))) ( -36.90)
>DroSec_CAF1 71290 114 - 1
UUUGGAAAGGAUCUAUUGAA-CAGCUUUUUAUGUCAGCCCCGCUUUUCUUGCUGUGUAAAAGCUGUGGAAAGAAAACCCGACAUCUAUUGGGUUGUGGGGGGAAAAUAUGAAAAG
..((((.....)))).....-...((((((((((...((((.((((((..(((.......)))...))))))..(((((((......)))))))....))))...)))))))))) ( -32.40)
>DroSim_CAF1 71806 115 - 1
UUUGGAAAGGCUCCAUUGAACCAGCUUUUUAUGUCAGCCCCGCUUUUCUUGCUGUGUAAAAGCUGAGGAAAGAAAACCCGACAUCCAUUGGGUUGUGGGGGGAAAAUAUGAAAAG
..((((.....)))).........((((((((((...((((.(((((((((((.......))).))))))))..(((((((......)))))))....))))...)))))))))) ( -36.80)
>DroEre_CAF1 72245 111 - 1
UUUGGGAAGGCUGCAUUAAA-CAGCUUUUUGUCGGCACCUUGCUUUUCUUGCUGUGUAAAAGCUGUGGAAAGAAAACCCCACCUCUGUUGGGUG---GGCGGAAAAUAUGAAAAG
..........((((.((..(-((((((((...(((((............)))))...)))))))))..))........((((((.....)))))---)))))............. ( -30.90)
>DroYak_CAF1 74130 111 - 1
UUUGGGAUGGCUGUAUUAAA-CAGCUUUUUAUAGCAGCCCCGCUUUUCUUGCUGUGUAAGAGCUGUGGAAAGAAAACCCGACAUCUAUUGGGUU---GGGGAAAAAUAUGAAAAG
.........(((((.....)-))))((((((((....((((.((((((..(((.......)))...))))))..(((((((......)))))))---)))).....)))))))). ( -34.30)
>consensus
UUUGGAAAGGCUCUAUUGAA_CAGCUUUUUAUGGCAGCCCCGCUUUUCUUGCUGUGUAAAAGCUGUGGAAAGAAAACCCGACAUCUAUUGGGUUGUGGGGGGAAAAUAUGAAAAG
........................(((((((((....((((.((((((..(((.......)))...))))))..(((((((......)))))))...)))).....))))))))) (-25.46 = -25.54 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:17 2006