Locus 3631

Sequence ID 2L_DroMel_CAF1
Location 10,582,997 – 10,583,090
Length 93
Max. P 0.747301
window5727

overview

Window 7

Location 10,582,997 – 10,583,090
Length 93
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 92.11
Mean single sequence MFE -30.34
Consensus MFE -26.32
Energy contribution -27.04
Covariance contribution 0.72
Combinations/Pair 1.07
Mean z-score -1.35
Structure conservation index 0.87
SVM decision value 0.47
SVM RNA-class probability 0.747301
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10582997 93 + 22407834
A--GGGGCGCAGCCAGGUGGGUGGGACCAAUCCGAGGUGUAAACAAGGCGCUUAAUUUGCAUUCGCCUGGUUGGCAGUUAAUUUAUUUGCAAGUC
.--..(((.(((((((((((((((((....))).((((((.......))))))......))))))))))))))((((.........))))..))) ( -33.90)
>DroSec_CAF1 70478 93 + 1
A--GGGGGGCAGUCAGGUGGGUGGGACCAAUCCGAGGUGUAAACAACGCGCUUAAUUUGCAUUCGCCCGGUUGGCAGUUAAUUUAUUUGCAAGUC
(--((..(((.(((((.((((((((..(((...(((((((.....)))).)))...)))..)))))))).))))).)))..)))........... ( -25.40)
>DroSim_CAF1 71002 93 + 1
G--GGGGGGCAGCCGGGUGGGUGGGACCAAUCCGAGGUGUAAACAACGCGCUUAAUUUGCAUUCGCCCGGUUGGCAGUUAAUUUAUUUGCAAGUC
.--......(((((((((((((((((....)))(((((((.....)))).)))......))))))))))))))((((.........))))..... ( -34.10)
>DroEre_CAF1 71435 91 + 1
----AGGGGCAGCCAGGUGGGACGGACCAAUCCGAGGUGUAAACAACGCUCUUAAUUUGCAUUCGCCUGGUUGGCAGUUAAUUUAUUUGCAAGUC
----.....((((((((((((.((((....)))).(((((.....)))))...........))))))))))))((((.........))))..... ( -29.10)
>DroYak_CAF1 73298 95 + 1
AAGAAGGGCCAGUCAGGUGGGACGGACCAAUCCGAGGUGUAAACAACGCUCUUAAUUUGCAUUCGCCUGGUUGGCAGUUAAUUUAUUUGCAAGUC
.......((((..((((((((.((((....)))).(((((.....)))))...........))))))))..)))).................... ( -29.20)
>consensus
A__GGGGGGCAGCCAGGUGGGUGGGACCAAUCCGAGGUGUAAACAACGCGCUUAAUUUGCAUUCGCCUGGUUGGCAGUUAAUUUAUUUGCAAGUC
.........(((((((((((((((((....)))(((((((.....)))).)))......))))))))))))))((((.........))))..... (-26.32 = -27.04 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:15 2006