Locus 3630

Sequence ID 2L_DroMel_CAF1
Location 10,582,827 – 10,582,919
Length 92
Max. P 0.541552
window5726

overview

Window 6

Location 10,582,827 – 10,582,919
Length 92
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -20.35
Consensus MFE -16.49
Energy contribution -16.72
Covariance contribution 0.22
Combinations/Pair 1.04
Mean z-score -2.06
Structure conservation index 0.81
SVM decision value 0.02
SVM RNA-class probability 0.541552
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10582827 92 - 22407834
A---ACCAUCACGGCUCUGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA
.---........(((...)))..(((((((...........)))))))((((((((((((((.....))))))))).)))))............. ( -18.50)
>DroSec_CAF1 70312 92 - 1
A---ACCAUCACGGCUCGGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA
.---.........(((.(((...(((((((...........)))))))(((.((((((((((.....)))))))))))))))))))......... ( -20.30)
>DroSim_CAF1 70836 92 - 1
A---ACCAUCACGGCUCGGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA
.---.........(((.(((...(((((((...........)))))))(((.((((((((((.....)))))))))))))))))))......... ( -20.30)
>DroEre_CAF1 71272 92 - 1
A---CCCAUCACGGCUCUGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA
.---........(((...)))..(((((((...........)))))))((((((((((((((.....))))))))).)))))............. ( -18.50)
>DroYak_CAF1 73128 92 - 1
A---CCCAUCACGGCGCUGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA
.---...........((((....(((((((...........)))))))((((((((((((((.....))))))))).)))))))))......... ( -21.00)
>DroAna_CAF1 74271 91 - 1
GAAAGCCCUC--U--GCGCCAAAAUGUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA
((((((....--.--((((......))))......)))))).((((((((((((((((((((.....))))))))).))))).....)))))).. ( -23.50)
>consensus
A___ACCAUCACGGCUCGGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA
............(((...)))..(((((((...........)))))))((((((((((((((.....))))))))).)))))............. (-16.49 = -16.72 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:14 2006