| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,152,543 – 1,152,655 |
| Length | 112 |
| Max. P | 0.529880 |
| Location | 1,152,543 – 1,152,655 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.53 |
| Mean single sequence MFE | -51.07 |
| Consensus MFE | -36.91 |
| Energy contribution | -40.05 |
| Covariance contribution | 3.14 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1152543 112 + 22407834 CCGUCGCGCUCGAAAACGGGCGCCUUGGCUUGCGCAGCUGAUGGAGCAGCAACGGCCUUGCUGCCGCCCGACUGGGCUGGCGAUUUGAACGGAGCCGGUCCAGUGCGUAGAG .....((((.......(((((((((..(((.....)))..).)).(((((((.....)))))))))))))(((((((((((............))))))))))))))).... ( -53.90) >DroPse_CAF1 45395 106 + 1 CCAUCGCGUGUGAAGACAGGGGCCUUGGUGGCAGCGGGAGCUGAGGGAGCAGCCGACG------AGCCAGACUGGGCUGGCGUCUUGAACGGUGCCGGUCCAGUGCGCAGUG .(((.((((...........(((.(((.(((((((....)))..(....).)))).))------))))..(((((((((((..(......)..))))))))))))))).))) ( -46.70) >DroSec_CAF1 46082 112 + 1 CCGUCGCGCUCGAAAACCGGCGCCUUGGCUUGCGCAGCAGGUGGAGCAGCAACGGCCUUGCUGCCGCCCGACUGGGCUGGCGAUUUGAACGGAGCCGGUCCAGUGCGCAGAG (((..((((.((.....))))))..))).((((((....((((..(((((((.....)))))))))))..(((((((((((............))))))))))))))))).. ( -54.40) >DroSim_CAF1 41129 112 + 1 CCGUCGCGCUCGAAAACGGGCGCCUUGGCUUGCGCAGCAGGUGGAGCAGCAACGGCCUUGCUGCCGCCCGACUGGGCUGGCGAUUUGAACGGAGCCGGUCCAGUGCGCAGAG (((..(((((((....)))))))..))).((((((....((((..(((((((.....)))))))))))..(((((((((((............))))))))))))))))).. ( -58.10) >DroYak_CAF1 40885 109 + 1 CCGUCGCGCUCGAAAACGGGCGCCUUGGCUUGCGCA---GAUGGAGCAGCAACGCCCUUGCUGCCGCCCGAUUGGGCUGGCGAUUUGAACGGAGCCGGUCCGGUGCGCAGAG (((..(((((((....)))))))..))).((((((.---..(((.(((((((.....)))))))...)))(((((((((((............))))))))))))))))).. ( -52.20) >DroPer_CAF1 47110 105 + 1 CCAUCGCGUGUGAAGACAGGGGCCUUA-AGGCAGCGGGAGAUGAGGGAGCAGCCGACG------AGCCAGACUGGGCUGGCGUCUUGAACGGUGCCGGUCCAGUGCGCAGUG .(((.((((...........(((....-.(((.((.............)).)))....------.)))..(((((((((((..(......)..))))))))))))))).))) ( -41.12) >consensus CCGUCGCGCUCGAAAACGGGCGCCUUGGCUUGCGCAGCAGAUGGAGCAGCAACGGCCUUGCUGCCGCCCGACUGGGCUGGCGAUUUGAACGGAGCCGGUCCAGUGCGCAGAG (((..(((((((....)))))))..)))..(((((..........(((((((.....)))))))......(((((((((((..(......)..))))))))))))))))... (-36.91 = -40.05 + 3.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:58 2006